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- [x] I have checked that this issue has not already been reported.
- [x] I have confirmed this bug exists on the latest version of scanpy.
- [x] (optional) I have confirmed this bug exists on the m…
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[Cell Types whitepaper](http://help.brain-map.org/download/attachments/8323525/CellTypes_Morph_Overview.pdf?version=4&modificationDate=1528310097913&api=v2), page 12
>Reconstructions were saved in th…
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#### Describe the bug
Manifold.TSNE gives back a lower-dimensional representation of the input data, which contains variation, even if the input data only contains zeros (it seems to do this in all c…
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> To visualize multiple regions (e.g., a Topic, or an enhancer signature): the
> total accessibility can be viewed in the tSNE, similarly as a gene signature
> in SCope v1. For, the genomic view of …
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Hello,
I tried to apply the stm with K=0 to my data and get an error message.
I typed in the following code:
> twitter_date
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Hi,
I am slowly learning chemplot. Is it possible to compare the tsne generated from chemplot with tanimoto distance based tsne and use your interactive visualization? Please guide.
thanks,
Jes…
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The computation of the all-nearest-neighbors KNN is the bottleneck in UMAP and TSNE and both of these algorithms can get away with using approximate neighbors as the number of points grows very large.…
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Hello Roger,
I've just come across this, and it looks quite impressive. I'd like to try it out.
Just a couple questions.
In your description for extract.py, you write:
The results are save…
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Hi all,
I've been trying to run FIt-SNE on a FCS file 20 million events large. Unfortunately, despite allocating 1.5TB of memory, an error still arises (below). This does not occur when running th…
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Currently the memory page shows query results after projecting them in 2D with tSNE.
UMAP could be a faster, more accurate dimensionality reduction algo.
Can you @zAlweNy26 and @nickprock collab o…