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![ldpred2_auto_chain_convergence](https://user-images.githubusercontent.com/128096956/231568818-6b8a0868-3fad-4374-8e2f-1dadd554e296.png)
Dear Author,
I have been using LDpred2-auto for my analyse…
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Data associated with this project https://www.medrxiv.org/content/10.1101/2023.12.06.23299426v1 has been shared with Open Targets and needs ingesting into the GWAS Catalog. The data is presented in se…
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I am new to these analysis and want to make region plot but its not giving me colors of legend labels, like i want Cirrhosis to be green, Asthma to be red and Fibrosis to be brown.
region_list
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I am trying to do the cell type analyses following the example with the Cahoy cell types and consistently get the error that Cahoy.1.l2.ldscore[./gz/bz2] cannot be opened. All files are executable, I …
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Firstly, thank you for releasing the weights for the model, it is an excellent work!
May I ask if you plan to release the training data? I noticed the arxiv paper talks about this.
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Alkes price lab moved their data to Google Storage. This is....not great, because it may mean all the data is now behind a paywall.
https://alkesgroup.broadinstitute.org/UKBB_LD/
Will see if I c…
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Hi there, great package you've built here. I have a bit of an issue with how the `region_size` parameter is designed to work. The way it is set up, the lead snps result solely from blocks of the regio…
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Can you please provide the training details used to train DeepSpiro and the CatBoostClassifier? How many epochs, learning rate, optimizer was used? Were all the modules trained sequentially or end-to-…
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# Background
Travis are have changed their open-source free tier, which places heavy restrictions on our needs. We are currently on a paid plan, but are looking to migrate off.
I have made notes…
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Hi Florian,
When I use the big_prodMat (or big_prodVec) function for HM3+ subset of UKBB variants (0.96 million SNPs), I see that it takes a really long time (10+ minutes) on a 24 core/100GB RAM no…