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Hi developers of `longphase`,
Recently I use `longphase` to phase the ONT sequenced patient data. The phased result looks good but I want to convert the phased VCF to two seperate fasta (one for m…
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### Description of the bug
hi,i find
```
process > NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_JOINT_CALLING_GERMLINE_GATK:GATK4_GENOTYPEGVCFS (joint_variant_calling)" going wrong.
…
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Hi,
I noticed you currently use version 4.3 of the VCF specification for tandem repeats. However, version 4.3 does not provide guidelines on handling tandem repeats, whereas version 4.4 does. Do y…
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I have a folder with ~12 vcf files from human genome ONT data that I want to plot, but I get this error: ValueError: Image size of 1358933x7111 pixels is too large. It must be less than 2^16 in each d…
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This is a request for improved documentation.
Doing a hunt through the documentation I find local alleles mentioned in one section only:
```
$ egrep -n -i "local.*allele" ../bcftools/doc/*.txt
…
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Dear author,
I have used Basevar on 5 BAM files, each approximately 3GB in size, but it requires a substantial amount of memory to run successfully, specifically up to 200GB. I would like to know i…
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1.
In this context the string ["phone storage"](https://github.com/SimpleMobileTools/Simple-Contacts/blob/master/app/src/main/res/values-de/strings.xml#L9C46-L9C46) seems not suitable. Users think it…
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Hello,
Thank you for creating this tool.
This issue is related to a closed issue [#19](https://github.com/KolmogorovLab/Severus/issues/19), which I cannot reopen.
The latest VCF specificat…
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[vcf~] works with float input for cutoff frequency in PD but only with signal in Heavy.
Not a big issue, just an observation.
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## Describe the issue
When running VEP using a local implementation via Docker, we see that variants are annotated with different ClinVar clinical significance values depending on the corresponding t…