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Hi this below is the code and error i am getting while i try running ./install.sh:
Installing Dependencies
Install Zlib
/root/selectionTools-master/zlib-1.2.8
Checking for gcc...
Checking for s…
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@pd3 I have randomly noticed that the file bin.c contains the following code:
```
if ( !tmp ) error("Could not parse %s: %s\n", list_def, list[i]);
if ( min!=max && (bin->bins[i]bins[i]>max) )
…
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Hi,
Not sure if this is intended, but I noticed that executables from some of the conda environments aren't getting symlinked into `bcbio_nextgen/tools/bin`. The ones from the bcbio-vm environment …
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Hello,
I can't plot the output of bcftools stats.
```
bcftools stats -F contigs.fa -s - filtered_samtools.vcf.gz > filtered_samtools.vcf.gz.stats
plot-vcfstats -p samtools_plot filtered_samtool…
ghost updated
6 years ago
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Hello,
I am using the last developmental version of bcftools and htslib. Attempting to plot with vcf-tools returns the following error code:
```
File "plot.py", line 80, in
for row in …
ghost updated
6 years ago
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# i can not compile the bcftools on my mac air, i don not why.
### tar -xjf bcftools-1.8.tar.bz2
### cd bcftools-1.8
### make
# below is the output info on screen:
~~~~~~ ^
Makefile:94: co…
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Hello,
I'm trying to install the samtool suite on a ubuntu machine. I installed htslib and samtools from the cloned git repo without issues, but bcftools is giving me an error.
I did
```
autohea…
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Hello,
I'm trying to install samtools, htslib, and bcftools. I installed htslib and samtools first from the git repo, but bcftools gives me an error when running make. I started with:
```
autoh…
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On gitter I did already mentioned this issue but now also including Code, vcf file and stacktrace.
For this I have used:
- Scala 2.11.12
- Spark 2.2.0
- Adam-core 0.22.0 and 0.23.0-SNAPTSHOT
…
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My issue is exactly identical as the closed one #179
I had the problem on my server on which the installed version is the 1.1. I then install the latest version (1.2) and use it and got exactly the sa…