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**Describe the Bug**
Worker processes not spawning with enough memory or scaling; therefore Nexflow will error with exit status 137 (not enough memory)
**Steps to Reproduce**
```
name: foo…
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When running workflow below I would expect to able to use this value:
`Test.test2.Echo.text`
But cromwell / womtools does use this value:
`Test.test2.Test2.Echo.text`
There is a double nested …
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Note: this requires more requirements gathering and review.
1. Consider adding a generic backend_parameter called "docker_host_configuration", with value "dragen_v1.0.0"
2. Create a new folder i…
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# Independent user test of GATK-SV single-sample pipeline on Biowulf
Ben previously configured the GATK-SV single-sample pipeline for Biowulf and tested using a COVNET WGS sample. I ran an independ…
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# Automatic coercions considered harmful
Authors: O. Rodeh with J. Didion (DNAnexus Inc.)
This issue describes a line of thought regarding type checking for WDL programs. It is based on experience…
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The WDL spec says that the order of declarations can be arbitrary:
https://github.com/openwdl/wdl/blob/16267770d12f28706d0d10e000700887f3649970/SPEC.md?plain=1#L5124
The referenced unit test does not…
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When working with submodules cromwell will only use outputs of a submodule when the complete submodule is finished.
In the example below the sleep command is blocking for the cat command while the …
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## **Describe the bug**
when i append the tss file ,it show this mistake
## **OS/Platform**
- Caper version: 2.1.3
## **Caper configuration file**
2022-04-11 21:37:00,784|caper.cli|INFO| Crom…
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Hi, team!
I am trying the chip-seq-pipeline2 and atac-seq-pipeline using "local" backend.
Both the pipeline stalled at "task=chip.read_genome_tsv:-1, retry=0, status=WaitingForReturnCode".
About …
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**Is your feature request related to a problem? Please describe.**
This PR introduces a basic WES launch tab for workflows: https://github.com/dockstore/dockstore-ui2/pull/1478, but there are areas we…