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Hi there,
Thanks for developing this tool. Unfortunately, when I tried to run it for a local assembly, it crashed.
Before I ran the pipeline, I'd followed the steps at https://blobtoolkit.genome…
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Dear team.
I have encountered a error during blobtools create for example, here is the error report.
python blobtools.py create \
-i example/assembly.fna \
-b example/mapping_1.bam \
-t exam…
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Hi
I am trying to set up the entire blobtools pipeline without snakemake (I know, actually somewhat pointless), and pretty much got it all to work.
Yet, I was wondering about extract_busco_genes…
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Hi,
I am trying to run BUSCO as part of your pipeline (using flye, for instance, but the error happens with every assembler) and constantly getting errors.
The error-
```
IMPORTANT: PLEASE RE…
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While running the pipeline (v2.6.1) on a cluster, I had the following error at the BUSCO step:
```
Creating specified working directory /lustre/scratch116/vr/projects/vgp/user/jf18/blobtoolkit/dat…
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Hi,
Thanks for such great software. I am wondering if it is possible to filter an assembly based on scaffold ID.
I have tried to do it using the list option, but it did not work.
Any help/ad…
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I'm getting the following error when running the pipeline:
```
INFO: using default value for 'assembly.alias'
Panopea_generosa_v1
INFO: using default value for 'reads.single'
[]
Building DAG o…
kubu4 updated
3 years ago
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Hello,
I'm actually testing your tool with the data included in the examples/ folder. But the cmd
```
blobtools add --busco examples/busco.tsv AssemblyName
```
return the following message:
``…
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I am trying to run blobtools Create but nothing seems to happen. I ran it for 2 hours with 5 cores and 20G memory and the only std output was:
`^M[%] : 0%| …
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Hi @rjchallis
I have pulled down the container and package into a singularity and managed to create dataset successfully. But when I try to add data such as blast results I get the following error…