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Relevant section from the [CODEX preprint](https://www.biorxiv.org/content/early/2018/02/05/203166):
> A 3D segmentation algorithm was therefore created to combine information from the nuclear stai…
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Creation of a _jterator_ module for pixel based classification à la CellProfiler [classifypixels](https://github.com/CellProfiler/CellProfiler/blob/master/cellprofiler/modules/classifypixels.py) modul…
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Right now, the appropriate columns are inferred from the properties files. They should be explicitly requested at UI startup and stored as part of the info table.
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**Describe the bug**
When I start CellProfiler I get a welcome window which is I assume should contain some useful information.
However, it's blank empty.
**To Reproduce**
Steps to reproduce th…
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Hello to test your pipelines in the cellprofiler, I see that you select the starting images depending on the cell that will appear in each image.
Could you provide the folder where the starting image…
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**Describe the bug**
We have a problem with Cellprofiler starting to many threads when running in a Docker container.
We are running several Docker Containers with Cellprofiler on our server and w…
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**Describe the bug**
I have a `.cppipe` pipeline file with a LoadData step. In the pipeline file, the URL of a LoadData CSV is specified. When I run the pipeline in batch mode, using the `--data-fi…
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Right now, cpa quits suddenly with the following error msg (unseen if not using cli)
---
Traceback (most recent call last):
File "cpa.py", line 529, in
app = CPAnalyst(redirect=False)
File …
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I am having trouble installing this package. please Help me figure this out