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https://mp.weixin.qq.com/s/Wisfj7TmD4-jOwV1skxppw
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https://mp.weixin.qq.com/s/RwZBIhjnBVry4BWZL8x1Zg
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> Traceback (most recent call last):
> File "/bin/correlation.py", line 43, in
> main()
> File "/bin/correlation.py", line 19, in main
> rna = pd.read_csv(opts.rnafile, sep='\t', inde…
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https://mp.weixin.qq.com/s/X-Tcces8aEdkpGOuEZvBmQ
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If I define ref.m be the CIBERSORT LM22 matrix, and beta.m be input gene expression data, does the result be right when select the CBS method?
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https://mp.weixin.qq.com/s/eZ8fVwg8n71Y4oWoidquUg
ixxmu updated
2 years ago
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The immune deconvolution results for Weiner et al. are still missing, presumably due to memory issues in running over all the N=838 samples.
Syksy updated
2 years ago
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https://mp.weixin.qq.com/s/-_DrXe9YQ9Dj8SHPCKMlxw
ixxmu updated
2 years ago
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Hi,
I'm following the full_tutorial and when I try to run this part of the code using the **custom signature matrix** created in this tutorial:
```
ciber_freqs = td.tumor_deconvolve(rna, 'ciber…
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@LorenzoMerotto added additional methods for mouse deconvolution.
For them to be fully usable for end-users, we still need to make them available in the documentation:
- [ ] Add methods to the…