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Syksy
/
curatedPCaData
Bioconductor R-package: Curated Prostate Cancer Data
Creative Commons Attribution 4.0 International
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Error: object 'wrapperOncoprintify' not found
#47
jjacobi3
closed
3 months ago
4
Bug fix to vignette dependency
#46
Syksy
closed
4 months ago
0
Bioconductor Suggestion
#45
ACSoupir
closed
4 months ago
2
Bioconductor review
#44
Syksy
closed
11 months ago
8
sift/polyphen scores
#43
varsha090597
closed
1 year ago
0
modified Mutation matrix within MAEs to include tumor barcodes
#42
varsha090597
closed
1 year ago
0
Varsha new
#41
Syksy
closed
1 year ago
1
TCGA
#40
varsha090597
closed
2 years ago
0
Hieronymus update
#39
varsha090597
closed
2 years ago
0
New MAEs and matrices
#38
varsha090597
closed
2 years ago
0
pull request
#37
varsha090597
closed
2 years ago
0
cBioPortal hg19 to hg38 liftOver
#36
Syksy
closed
2 years ago
1
Xenabrowser mapping not up to date
#35
Syksy
closed
2 years ago
1
colData does not work for MAE Barwick
#34
varsha090597
closed
2 years ago
1
Cibersort results for Weiner et al. missing
#33
Syksy
closed
2 years ago
1
Weiner et al. & newly generated GEX for CIBERSORTx
#32
Syksy
closed
2 years ago
0
Wang et al identifiers mismatch in derived variables
#31
Syksy
closed
2 years ago
1
CNA and fusion sample size different in TCGA
#30
MikeOrman
closed
2 years ago
2
Fusion status
#29
MikeOrman
closed
2 years ago
1
Sample IDs in Clinical data - Taylor et.al.
#28
varsha090597
closed
2 years ago
2
Use the generic identifiers PCA#### / PAN#### in Taylor et al.
#27
Syksy
closed
2 years ago
1
Include normal samples in Taylor et al.
#26
Syksy
closed
2 years ago
1
Double-checking ranks of newly normalized data
#25
Syksy
closed
2 years ago
1
Benchmarking description
#24
ACSoupir
closed
2 years ago
1
Row names
#23
ACSoupir
closed
2 years ago
1
Gene ID aliases alter between datasets, especially older annotation ones
#22
Syksy
closed
3 years ago
2
Risk score benchmarking
#21
Syksy
closed
1 year ago
1
Abida et al focus on polyA / TCGA focus on TPM normalized GEX (OSF)
#20
Syksy
closed
3 years ago
1
Purity Estimates
#19
jccostel
closed
2 years ago
2
Splitting apart OSF portion of TCGA
#18
Syksy
closed
2 years ago
2
Creation of sufficiently elaborate metadata for each MAE
#17
Syksy
closed
2 years ago
1
Package fails to build
#16
varsha090597
closed
3 years ago
2
ENSG ids in Friedrich
#15
Syksy
closed
3 years ago
4
duplicate gene id in TCGA GEX
#14
jccostel
closed
2 years ago
4
CNA calls
#13
jccostel
closed
2 years ago
1
GEX and CNA objects
#12
jccostel
closed
2 years ago
1
Varsha new2
#11
varsha090597
closed
3 years ago
0
Jc structure
#10
jhcreed
closed
3 years ago
0
Jc structure
#9
jhcreed
closed
3 years ago
0
List of methods/packages for downstream processing and appending to corresponding fields in pData
#8
Syksy
closed
2 years ago
2
meeting notes
#7
jhcreed
closed
3 years ago
4
R Studio and/or OS specificity issues with line endings
#6
Syksy
closed
4 years ago
3
To do list
#5
jhcreed
closed
3 years ago
2
script data mismatch
#4
jhcreed
closed
3 years ago
2
missing template information
#3
jhcreed
closed
4 years ago
1
Taylor gex data
#2
jhcreed
closed
4 years ago
2
Update from master
#1
chrisleitzinger
closed
4 years ago
0