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We may run into serious memory issues for large data sets. Namely, with the initial sampling of `makeNhoods`. I have a suspicion that very sparse initial sampling might be sub-optimal on large data se…
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Hello!
I am trying to evaluate differential HTO expression within one individual cluster, not in comparison to all other clusters.
For our single cell experiment, we have four treatment groups t…
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Hi,
Sccoda is suggesting some cell types to be affected by the inhibitor, what further analysis to perform on sccoda results?
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Hello. I have tried to run the command to assign taxonomy which is,
taxa
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Hello Oliver,
I'd like to use TEtranscripts to analyze TE in rice (Oryza sativa japonica), however I don't know how to get the TE GTF and index files in the given website, while most of the files i…
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In an attempt to include more examples about probabilistic modeling/analysis approaches to microbiome data to be available in the book.
`pibble` from the `fido` package offers a Multinomial Logistic…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/mcalgaro93/benchdamic
Confirm the following by ed…
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Hi, thanks for developing such an amazing toolbox. So far, I successfully run the example (https://carter-allen.github.io/stxBrain_all_maple.html ). But, I have a question about the option of 'fit_map…
zqsha updated
2 years ago
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@brwnj My professor and I don't think that a co-assembly over multiple files is a good Idea. He proposes me to do filter out known genomes to better assemble unknown.
On the other hand, co-assembly …
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/samWieczorek/Dapar2
Confirm the following by edit…