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theislab
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scCODA
A Bayesian model for compositional single-cell data analysis
BSD 3-Clause "New" or "Revised" License
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How to plot the final result?
#98
mainharryHR
closed
1 month ago
1
Multiple comparisons
#97
mainharryHR
opened
1 month ago
2
Using continuous variables yield weird results.
#96
Marwansha
opened
1 month ago
3
Bug in viz.boxplots function (and possibly others)
#95
reemagit
opened
4 months ago
3
How to compare multiple groups with sccoda
#94
karenlawwc
closed
1 month ago
7
interpreting the output with the issue of compositionality.
#93
Marwansha
closed
1 month ago
6
module 'pertpy.plot' has no attribute 'coda'
#92
Marwansha
closed
4 months ago
1
Influence of number of cells in parameterization
#91
auesro
closed
4 months ago
6
Usage without replicates ?
#90
divyanshusrivastava
closed
4 months ago
2
Covariate has non-unique values
#89
schroeme
closed
4 months ago
2
Use the model with multiple covariants including numeric ones?
#88
RunyuXia
closed
1 month ago
1
mixed effect model
#87
t-a-m-i
closed
1 month ago
1
Different results for same comparison, based on which group is selected as reference
#86
mareymessi
closed
4 months ago
2
Additive model with batch
#85
flde
closed
9 months ago
2
Final Parameter and log2-fold change have different signs
#84
PauBadiaM
closed
10 months ago
6
Tutorial for R/reticulate
#83
ConDem94
closed
4 months ago
3
model comparison using LOO/WAIC
#82
hoeflerb
closed
4 months ago
2
additive effects and interaction terms
#81
hoeflerb
closed
11 months ago
3
Exporting Summary Results
#80
antonio-miranda
closed
4 months ago
1
Error when num_burnins > num_results
#79
dawe
closed
1 year ago
4
AttributeError: module 'arviz' has no attribute 'data'
#78
jhong26
closed
1 year ago
2
Questions about generalizability to other NGS datasets
#77
jolespin
closed
4 months ago
1
TypeError: '<' not supported between instances of 'str' and 'int' on toy dataset
#76
jolespin
closed
1 year ago
1
conda compatibility
#75
Nusob888
closed
1 year ago
4
Bootstrap or splitting my samples
#74
dekan-aleksandr
closed
1 year ago
2
Replace sklearn dependency with scikit-learn
#73
radutanasa
closed
1 year ago
1
scCODA p-values?
#72
katieaney
closed
4 months ago
1
access sim_results.summary() for further analysis in R
#71
dwendisch
closed
1 year ago
2
Feature Request: Automatically print significance indicator in boxplots
#70
alefrol638
opened
1 year ago
1
Feature Request: log10 scaling for Boxplots
#69
alefrol638
closed
4 months ago
1
All cell types as reference loop error
#68
AClab-sgarcia
closed
1 year ago
17
Understanding inclusion probability
#67
auesro
closed
1 year ago
4
Zero log2-fold change but credible change being identified?
#66
learning-MD
closed
1 year ago
3
loading data with dat.from_scanpy
#65
HosseinMousavi
closed
1 year ago
2
Cell identities displaying as numbers?
#64
potterae
closed
1 year ago
1
WARNING:tensorflow:@custom_gradient grad_fn has 'variables' in signature, but no ResourceVariables were used on the forward pass.
#63
bobosfw
closed
1 year ago
1
est_fdr did not change the result
#62
grimwoo
closed
1 year ago
6
P value (FDR) and interpretation of "Final Parameter"
#61
grimwoo
closed
1 year ago
2
Is the input data expected by scCODA the size of the cell type for each sample?
#60
altairwei
closed
1 year ago
1
Update 0.1.8
#59
johannesostner
closed
2 years ago
1
Which tensorflow version to use?
#58
c-westhoven
closed
1 year ago
3
Influence of subtypes present in the dataset
#57
auesro
closed
2 years ago
4
WARNING:tensorflow:@custom_gradient grad_fn has 'variables' in signature, but no ResourceVariables were used on the forward pass.
#56
auesro
closed
2 years ago
2
col_wrap in utils.visualization.boxplots
#55
c-westhoven
closed
2 years ago
1
Importance of warnings/errors in model_scelltype_Time.sample_hmc() output
#54
Lopiniatre
closed
1 year ago
1
Looping over cell types to use as reference: discrepancy?
#53
koenvandenberge
opened
2 years ago
11
verbose option for `sample_hmc`
#52
koenvandenberge
closed
2 years ago
1
How to save the results as dataframe or show the whole summary?
#51
Zifeng-L
closed
2 years ago
2
Stacked barplot not working
#50
learning-MD
closed
2 years ago
2
Allow set random seed for reproducibility in `CompositionalAnalysis` objects
#49
yihming
opened
2 years ago
1
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