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Hi,
I love that you have made this tool. installed using conda and I ran this command "TideHunter -u barcode18_test.fastq > units3.fa" and get a file full of the split out subreads/repeats. Howev…
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@lisa418 can you provide link to your fastq files?
since they are in iplant, you can get a link from there.
sr320 updated
9 years ago
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i have around 60 samples, that performed paired-end seq for metagenome, total ~400G clean data.
i have combine all forward reads and reverse reads, gained F.fastq,gz and R.fastq.gz. and than i run:
…
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Dear SRA creators,
I trying to dowload data from https://www.ncbi.nlm.nih.gov/sra?linkname=bioproject_sra_all&from_uid=769413 , here is the process I am doing:
`esearch -db bioproject -query PR…
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If you use HERRO via `dorado correct` (https://github.com/nanoporetech/dorado?tab=readme-ov-file#read-error-correction) it outputs the reads as fasta instead of fastq. Will this pipeline work on those…
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Hi Thanks for developing a great tool!
I would just like some clarification on the input to the tool, specifically the `sample.fq` in
`kmc -ci1 -cs10000 -k25 -t${thread} sample.fq kmc_db kmc_…
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I received my paired end ITS fastq files as demultiplexed, and merged files with both forward and reverse reads together per fastq file.
I have modified the dada2 ITS pipeline a bit to reflect this…
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Hi all,
Just to start us off, I wanted to post something that I had gotten snagged up on when I first started using dada2 in R.
You need to use .fastq files and your .fastq.gz files should NOT…
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Hi,
I am running Prinseq-plus-plus on paired end fastq files and the ouput seems to be probematic.
In at least one read (haven't checked all the reads) the lengths of sequence and quality values dif…
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Seems pbclip works well on PacBio data, but is that possible to output fastq file? Thanks a lot
Best
Zhixing