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voutcn
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megahit
Ultra-fast and memory-efficient (meta-)genome assembler
http://www.ncbi.nlm.nih.gov/pubmed/25609793
GNU General Public License v3.0
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Setting parameters for Megahit
#374
Rose1904
opened
2 weeks ago
0
exit code -6
#373
2061574124
opened
3 weeks ago
1
help to find megahit code that uses GPU
#372
natarivera33
opened
3 weeks ago
0
Multiple paired end fasta file question
#371
g-raymo
opened
1 month ago
0
What is the full name of multi？
#370
liuxue-123
opened
2 months ago
2
Create LC1.6
#369
ramavchar
closed
1 month ago
0
Add support for non-x86_64 architectures (e.g. Linux ARM64)
#368
martin-g
opened
3 months ago
0
BUG: Unable to set kmer size
#367
haogecat
opened
3 months ago
0
Fix `gcc-13` build failure (missing `<cstdint>` include)
#366
trofi
opened
5 months ago
0
Illumina SE
#365
nicolo-tellini
opened
5 months ago
0
Merge simple edges in the assembly graph?
#364
schorlton
opened
7 months ago
1
Error: Exit code -7
#363
MoriatyZy
opened
9 months ago
0
Is there a default for the --preset option?
#362
jolespin
opened
10 months ago
0
How to tell what the "peak memory" or "maximum memory needed" would be for a job based on the log?
#361
jolespin
opened
10 months ago
0
Add PIGZ
#360
gariem
closed
8 months ago
0
MEGAHIT output: scaffolds
#359
tvtv195
opened
1 year ago
3
Megahit running for almost a month now
#358
OluchiAroh
opened
1 year ago
0
How to solve memory shortages?
#357
xfk274280
opened
1 year ago
0
Running into a permission error while running a test data
#356
marynjerey
opened
1 year ago
0
Exit code 1
#355
xsq2022
opened
1 year ago
0
Exit Code -6
#354
GJPaul
opened
1 year ago
0
Will circular DNA be reported?
#353
ZeweiSong
opened
1 year ago
3
== Error == system call for: "['']" finished abnormally, OS return value: 2
#352
MaxBai0123
opened
1 year ago
0
Hi~I got this error: 'Exit code -9'
#351
MaxBai0123
opened
1 year ago
3
Adds an interactive Jupyter notebook example
#350
lebovic
closed
1 year ago
2
use available processor for process not all on host
#349
EricDeveaud
closed
1 year ago
0
Stuck with exit code 1 for a while please help
#348
Sabrin2020
closed
1 year ago
2
Ubuntu WSL and Open-Suse server megahit_core read2sdbg
#347
feeka
opened
1 year ago
0
Usage on Mac - megahit_core read2sdbg
#346
feeka
opened
1 year ago
0
Assembly contiguity & sequencing depth
#345
TymekPieszko
opened
1 year ago
0
Error with latest OS X Bioconda recipe
#344
vinisalazar
opened
1 year ago
1
Problem with big assembly
#343
ElsaMMendes
closed
1 year ago
1
Update README.md
#342
rekado
closed
1 year ago
0
When I run the command, Megahit can only recognize one fq file, what happens
#341
chenyu-11
closed
1 year ago
0
I set 560 threads,but i got this log.
#340
WJT0925
opened
1 year ago
0
ID in header
#339
Biofarmer
opened
1 year ago
0
number of cpus//threads
#338
EricDeveaud
closed
1 year ago
2
Exit code -15
#337
Menggong-li
opened
1 year ago
0
Question: how megahit deals with different size read sets?
#336
Valentin-Bio-zz
opened
1 year ago
0
Exit code 9.
#335
schrad910
opened
2 years ago
1
Which minimum kmer is supposed to be used on the 701G merged single-end .fa reads?
#334
B-1991-ing
opened
2 years ago
1
[All datasets] Suspicious report of identical # unitigs disconnected in graph pruning
#333
GabeAl
opened
2 years ago
0
Can we use megahit to assemble rna-seq data?
#332
xiekunwhy
opened
2 years ago
2
Exit code 6 when assembling kmers
#331
hbbshulman
opened
2 years ago
1
Graviton2-b
#330
accopeland
opened
2 years ago
3
Minimum changes to compile on graviton2 (no bmi2, no popcnt)
#329
accopeland
closed
2 years ago
1
Interpretation of Fasta Headers
#328
bio-unach
opened
2 years ago
0
Assembly killed exit code 9 despite sufficient memory?
#327
jzrapp
closed
2 years ago
1
Does memory avaliable need to be >= size of input data?
#326
Rob-murphys
opened
2 years ago
0
Paired-end reads and --min-count
#325
ZeweiSong
opened
2 years ago
1
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