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voutcn
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megahit
Ultra-fast and memory-efficient (meta-)genome assembler
http://www.ncbi.nlm.nih.gov/pubmed/25609793
GNU General Public License v3.0
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Does memory avaliable need to be >= size of input data?
#326
Rob-murphys
opened
2 years ago
0
Paired-end reads and --min-count
#325
ZeweiSong
opened
2 years ago
1
assembly error
#324
quliping
opened
2 years ago
0
Understanding kmer contigs for FASTG Output
#323
joshuakirsch
opened
2 years ago
2
options.json
#322
fujch7
opened
2 years ago
0
Better results with lower sequencing depth !?
#321
soungalo
opened
2 years ago
0
Megahit in Arm Neoverse de 64 bits core
#320
higaredavm
opened
2 years ago
9
OSError: [Errno 22] Invalid argument
#319
vasudhajain29
opened
2 years ago
2
support for M1 chip
#318
jianshu93
opened
2 years ago
0
too much time without any update files
#317
JiaZhong28
opened
2 years ago
0
Metagenome assembly: counter-intuitive results assembling unmerged vs. merged reads
#316
rcmueller
opened
2 years ago
8
Error in assembly. Error occurs after *Assemble contigs from SdBG for k = 21*
#315
hannah-doris
opened
2 years ago
1
Is the addition of mercy kmers default behaviour?
#314
Rob-murphys
opened
2 years ago
0
k options ignored
#313
nicholascdove
opened
2 years ago
1
Passing check 1 failed
#312
ntromas
opened
3 years ago
0
megahit_core/toolkit problems with contig2fastq
#311
JHarrisonEcoEvo
opened
3 years ago
1
megahit v1.2.9 Exit code 11
#310
lcamVz
opened
3 years ago
2
-t/--num-cpu-threads doesn't affect the number of threads used
#309
iseultj
closed
2 years ago
1
Feature request: --force option
#308
mw55309
closed
2 years ago
2
help
#307
niexiaoqing
opened
3 years ago
0
help
#306
niexiaoqing
closed
3 years ago
0
Exit code 7 error when running megahit_core count
#305
jmartin77777
opened
3 years ago
0
High Duplicates reads- How does it affects the assembly and process.?
#304
stachyris
opened
3 years ago
0
Megahit not running on compressed files (gz)
#303
martin-hartmann
opened
3 years ago
1
input -1 and -2 should be paired and in order
#302
Biofarmer
opened
3 years ago
0
Runtime slower than expected?
#301
martin-hartmann
opened
3 years ago
1
Output
#300
18AS
opened
3 years ago
11
Recover an assembly i.e. the "final.contigs.fa" file, using the intermediary files
#299
MaryoHg
closed
1 year ago
2
Exit code 255 error
#298
clb21565
opened
3 years ago
0
Convert reads to binary library step
#297
RitaBogorad
opened
3 years ago
2
I want to know the difference of different methods to co-assemble multiple samples by using megahit
#296
biohuzi
opened
3 years ago
0
illumina_350_library
#295
atongsa
opened
3 years ago
0
FATAL: kernel too old
#294
zhang-HZAU
opened
3 years ago
1
Could Megahit avoid producing chimera when assemble the shotgun metagenome? Do we need to consider it?
#293
nduan1
opened
3 years ago
0
Question about output name
#292
Ahmed-Shibl
opened
3 years ago
0
Possibilities of Reassembly too many metagenomic NGS-assembled short contigs
#291
neptuneyt
opened
3 years ago
0
Exit code -4 for make simple_test
#290
BernardBilloud
opened
3 years ago
3
ERROR Exit code -11
#289
albaguillen13
opened
3 years ago
1
ERROR - Exit code 1
#288
laurichi13
opened
3 years ago
1
MissingOutputException using Megahit as part of Sunbeam, on WSL
#287
TakacsBertalan
opened
3 years ago
0
megahit permission error in WSL miniconda environment
#286
nahid18
closed
3 years ago
1
Trouble running docker container with example inputs
#285
lsimmons2
opened
4 years ago
2
--min-contig-len confused
#284
feihongloveworld
opened
4 years ago
2
how to get all contig and reads which donot Constituted contig
#283
feihongloveworld
opened
4 years ago
0
Running into error "172 - Invalid format. Expect field k, got"
#282
tdido
closed
4 years ago
1
co-assembly memory requirements
#281
kmbuckeridge
opened
4 years ago
0
parameter setting for lowest memory consumption.
#280
rjsorr
opened
4 years ago
0
454 library assembly
#279
Anto007
opened
4 years ago
0
Slow assembly for diverse metagenome
#278
Puumanamana
opened
4 years ago
0
Combining pair-end reads and single end in megahit
#277
fconstancias
closed
4 years ago
1
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