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voutcn
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megahit
Ultra-fast and memory-efficient (meta-)genome assembler
http://www.ncbi.nlm.nih.gov/pubmed/25609793
GNU General Public License v3.0
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Combining pair-end reads and single end in megahit
#277
fconstancias
closed
4 years ago
1
error, exit code 255
#276
mewu3
closed
4 years ago
1
Exit code -11
#275
rec3141
opened
4 years ago
2
Problem occurred when scaffolding
#274
Prunoideae
opened
4 years ago
2
Are you planning to implement hybrid assembly using Nanopore/PacBio
#273
stefcamp
opened
4 years ago
0
Getting error code -9 on digital ocean droplet
#272
tayabsoomro
opened
4 years ago
3
Explain "Error occurs when reading inputs"
#271
jan-glx
opened
4 years ago
9
megahit exit code -6
#270
Zhanglin1990
closed
4 years ago
1
Megahit for meta-transcriptome assembly
#269
ARW-UBT
opened
4 years ago
3
Is megahit suitable for high heterozygous rate plant genome?
#268
xiekunwhy
opened
4 years ago
0
How to run megahit with MPI?
#267
zckoo007
closed
4 years ago
1
Preset meta-large uses --min-count 1
#266
mdehollander
opened
4 years ago
1
PE library number of reads is odd - Exit Code 1
#265
jronwalker
opened
4 years ago
3
different assemble runing megahit with same sample and same parameters
#264
feihongloveworld
closed
4 years ago
1
Very different results running megahit v1.2.9 with same parameters on two different clusters
#263
SonWende
closed
4 years ago
1
Force option not mentioned in help/usage message
#262
mdehollander
opened
4 years ago
0
sorting/kmer_counter.cpp Read count higher than total read count
#261
Finesim97
closed
4 years ago
1
Any plans to implement scaffolding/gap filling?
#260
edgardomortiz
opened
4 years ago
1
The N50 is very short from soil sample
#259
lulunisrna
opened
4 years ago
2
Fastg node ids vs contig ids
#258
snurk
opened
4 years ago
1
Exit code -11
#257
fengcong3
opened
4 years ago
1
Fix the documented default value for k-step
#256
jayrbolton
closed
2 years ago
1
--bubble-level do not merge bubbles 0-3, 0 to disable [2]
#255
zpinocchio
closed
4 years ago
1
Low fraction of assembly represented by contigs >= 1000bp
#254
franciscozorrilla
closed
4 years ago
1
MEGAHIT installation on MacOSX
#253
theo-llewellyn
closed
4 years ago
0
Interpretation of Fasta Headers
#252
ctseto
closed
4 years ago
0
Segmentation fault: megahit_core assemble
#251
arivers
opened
4 years ago
3
Not running
#250
rohenriques
opened
4 years ago
1
Trying to understand the effects of varying inputs
#249
Laura-Alex
opened
4 years ago
0
Compilation issues
#248
shayandoust
closed
4 years ago
3
How many reads were used / not used in the assembly?
#247
tseemann
closed
4 years ago
2
Set up CI with Azure Pipelines
#246
voutcn
closed
4 years ago
1
Set up CI with Azure Pipelines
#245
voutcn
closed
4 years ago
0
Segmentation fault megahit_core_popcnt version 1.2.8.
#244
vcepeda
closed
4 years ago
4
Pre-built docker image-docker run error: docker: Error response from daemon
#243
snmrna
closed
4 years ago
7
build warnings
#242
mathog
closed
4 years ago
2
Additional assembly step for metagenome assembled genomes (MAGs)
#241
franciscozorrilla
closed
4 years ago
3
Exit code -6
#240
spongebob22
closed
4 years ago
1
MEGAHIT producing inflated assemblies?
#239
soungalo
opened
4 years ago
3
cmake create_symlink fails
#238
joshua-theisen
closed
4 years ago
1
Assertion failed
#237
sjaenick
closed
4 years ago
5
about memory setting
#236
PuziJiang
closed
5 years ago
1
How to get the reads which formed the contigs in Megahit
#235
RamaSravanimeduri
closed
5 years ago
2
[1.2.8] Error during assembly phase
#234
sjaenick
closed
5 years ago
3
A question about -r/--read
#233
Wyue1415
closed
5 years ago
1
Cannot detect available memory on OSX
#232
jenniportman
closed
4 years ago
3
1.2.8
#231
voutcn
closed
5 years ago
1
Small assembly size
#230
soungalo
closed
5 years ago
2
Add intermediate megahit_core_popcnt for CPUs that have ABM but not BMI2
#229
sjaenick
closed
5 years ago
2
v1.2.7
#228
voutcn
closed
5 years ago
1
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