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Reference genome for Fagus sylvatica:
http://thines-lab.senckenberg.de/beechgenome/index2.htm
Reference manuscript:
https://academic.oup.com/gigascience/article/7/6/giy063/5017772
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Hi,
I ran Pilon using the following command:
```
pilon --genome $RUN7/all_contigs.fasta --bam $COMBINED/run7_raw.sorted.bam -Xmx1000G --output ./pilon.output --threads
```
The `--genome` opti…
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Hi, i've jsut recently installed reapeatHMM following the installation instructions on github. I am currently trying to run repeatHMM in the repeathmmenv virtual environment created during installatio…
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https://onlinelibrary.wiley.com/doi/full/10.1111/pbi.12875
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## Short description of the problem
DAS Tool needs USearch, but it's not listed in the requirements.
## anvi'o version
```
Anvi'o .......................................: marie (v8-dev)
Pyt…
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First, all reads are merged.
We skip the CO_ and CH_ as they contain all reads for hostplant respectively.
```
ls -1 05-CLEAN-MERGED/* | paste - - | grep -v "CO_" | grep -v "CH_" > doc/all-clean-re…
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[1-ERROR]
_____________________________________________
CMD: **annotate_with_cravat**: **oc** run \~/Pipline/Hematological_Disease/Fastqs/NDX551335/20240802_E200019755_BeiJingDiAnT7_C_1/00.mergeRawF…
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Hello, Developer,
I'm trying to use ScanFold to predict a 2D RNA Structure of a RNA sequences. However, I encounter a runtime error as below:
```
Making output folder named:FLAVs_UTR5_ScanFol…
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Can I run iSAFE using a vcf file on the entire chromosome?
Second, I tried to run iSafe on the haps file after converting the vcf containing phased data to haps by plink2.
But I ended up getting …
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Original paper:
https://www.nature.com/articles/ncomms3445
DB:
https://morus.swu.edu.cn/