issues
search
WGLab
/
RepeatHMM
a hidden Markov model to infer simple repeats from genome sequences
Other
34
stars
14
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Error installing RepeatHMM
#60
guypwhunt
opened
1 year ago
2
ResolvePackageNotFound while running conda env create -f environment.yml
#59
MarijaCausevska
opened
1 year ago
2
error: dont support for python 3
#58
11malong
opened
1 year ago
2
ERROR : no pa file and Error no information for 0
#57
HLHsieh
opened
1 year ago
3
ERROR : no pa file
#56
11malong
opened
1 year ago
0
ImportError: cannot import name _UnsymmetricPairAlignment
#55
aishsk87
opened
1 year ago
2
--repeatName
#54
ghost
opened
2 years ago
2
Error no information for 0
#53
ghost
opened
2 years ago
2
undefined symbol: npy_fabsl
#52
ghost
closed
2 years ago
2
No module named 'UnsymmetricPairAlignment
#51
ghost
closed
2 years ago
2
An error in RepeatHMM Scan (using hg38.trf.nochr.bed)
#50
fjmuzengyiheng
opened
2 years ago
1
Conda Installation: Environment not resolving.
#49
AliSTaylor
opened
2 years ago
3
error in RepeatHMM Scan
#48
stat-lab
opened
2 years ago
2
Suggested settings for CCS reads
#47
davidlougheed
opened
2 years ago
1
AttributeError: symbol not found with dlsym (miniconda3)
#46
fabienkst
opened
2 years ago
3
error with commonOptions (Illumina)
#45
davidlougheed
opened
2 years ago
1
Underestimation of Repeat Number following Split-and-Align
#44
SeAudet
opened
3 years ago
6
'No pa file' problem & 'qsub: script file 'smp' cannot be loaded - No such file or directory'
#43
LiShuhang-gif
opened
3 years ago
1
Multi-thread errors
#42
woodoo46
opened
3 years ago
5
Segmentation fault (core dumped)
#41
wiesswang
opened
3 years ago
1
erro no pa file
#40
huangyuanf
opened
3 years ago
7
Error
#39
woodoo46
opened
3 years ago
6
Result
#38
woodoo46
closed
3 years ago
0
Running RepeatHMM Scan
#37
woodoo46
closed
3 years ago
3
error [main_samview]
#36
MeiShu00
opened
3 years ago
15
Environment error (no module named peakutils)
#35
Tine-dk
opened
3 years ago
4
example data for testing the tool
#34
kaichop
opened
4 years ago
1
NameError: global name 'testall' is not defined
#33
Tine-dk
opened
4 years ago
5
ImportError: No module named _UnsymmetricPairAlignment
#32
Tine-dk
closed
4 years ago
5
Low number of reads mapping and access to bam files
#31
pcr1120
closed
3 years ago
3
An Error of RepeatHMM, when I typed python repeatHMM.py
#30
oca-john
closed
4 years ago
8
No pa file reference_sts//hg38/hg38.predefined.pa
#29
woodoo46
closed
4 years ago
5
How to use paired end fastq reads for RepeatHMM
#28
amrita1983
closed
4 years ago
4
Result interpretations!
#27
GraceGrace1007
closed
4 years ago
16
MinION data
#26
woodoo46
closed
4 years ago
5
running RepeatHMM from virtual environment as suggested in issue 7
#25
avitalsteiman
closed
5 years ago
8
RepeatHMM and RepeatCCS
#24
wenluo711
closed
5 years ago
4
Input of UserDefinedRepeat
#23
zthornton96
closed
5 years ago
6
add reminder for installation
#22
liutiming
opened
5 years ago
2
not enough evidence to support the estimation
#21
wenluo711
closed
5 years ago
6
Installation issue
#20
MaestSi
closed
5 years ago
6
Question on customised files
#19
liutiming
closed
5 years ago
4
Update Makefile
#18
liutiming
opened
5 years ago
0
Error no information
#17
liutiming
closed
5 years ago
21
Genes not in hg*predefined.pa
#16
Langna
closed
6 years ago
3
strand parameter in user defined repeat
#15
drumdum
closed
6 years ago
2
ModuleNotFoundError: No module named 'Bio'
#14
efsalcedo
closed
6 years ago
24
Tandem Repeat Finder
#13
andyb3
closed
6 years ago
2
Reproducibility Question
#12
andyb3
closed
6 years ago
4
apply to exom sequence data
#11
tlu0918
closed
6 years ago
4
Next