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WGLab
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RepeatHMM
a hidden Markov model to infer simple repeats from genome sequences
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Error installing RepeatHMM
#60
guypwhunt
opened
11 months ago
2
ResolvePackageNotFound while running conda env create -f environment.yml
#59
MarijaCausevska
opened
1 year ago
1
error: dont support for python 3
#58
11malong
opened
1 year ago
2
ERROR : no pa file and Error no information for 0
#57
HLHsieh
opened
1 year ago
3
ERROR : no pa file
#56
11malong
opened
1 year ago
0
ImportError: cannot import name _UnsymmetricPairAlignment
#55
aishsk87
opened
1 year ago
2
--repeatName
#54
ghost
opened
1 year ago
2
Error no information for 0
#53
ghost
opened
1 year ago
2
undefined symbol: npy_fabsl
#52
ghost
closed
1 year ago
2
No module named 'UnsymmetricPairAlignment
#51
ghost
closed
1 year ago
2
An error in RepeatHMM Scan (using hg38.trf.nochr.bed)
#50
fjmuzengyiheng
opened
2 years ago
1
Conda Installation: Environment not resolving.
#49
AliSTaylor
opened
2 years ago
3
error in RepeatHMM Scan
#48
stat-lab
opened
2 years ago
2
Suggested settings for CCS reads
#47
davidlougheed
opened
2 years ago
1
AttributeError: symbol not found with dlsym (miniconda3)
#46
fabienkst
opened
2 years ago
3
error with commonOptions (Illumina)
#45
davidlougheed
opened
2 years ago
1
Underestimation of Repeat Number following Split-and-Align
#44
SeAudet
opened
3 years ago
6
'No pa file' problem & 'qsub: script file 'smp' cannot be loaded - No such file or directory'
#43
LiShuhang-gif
opened
3 years ago
1
Multi-thread errors
#42
woodoo46
opened
3 years ago
5
Segmentation fault (core dumped)
#41
wiesswang
opened
3 years ago
1
erro no pa file
#40
huangyuanf
opened
3 years ago
7
Error
#39
woodoo46
opened
3 years ago
6
Result
#38
woodoo46
closed
3 years ago
0
Running RepeatHMM Scan
#37
woodoo46
closed
3 years ago
3
error [main_samview]
#36
MeiShu00
opened
3 years ago
15
Environment error (no module named peakutils)
#35
Tine-dk
opened
3 years ago
4
example data for testing the tool
#34
kaichop
opened
3 years ago
1
NameError: global name 'testall' is not defined
#33
Tine-dk
opened
4 years ago
5
ImportError: No module named _UnsymmetricPairAlignment
#32
Tine-dk
closed
4 years ago
5
Low number of reads mapping and access to bam files
#31
pcr1120
closed
3 years ago
3
An Error of RepeatHMM, when I typed python repeatHMM.py
#30
oca-john
closed
4 years ago
8
No pa file reference_sts//hg38/hg38.predefined.pa
#29
woodoo46
closed
4 years ago
5
How to use paired end fastq reads for RepeatHMM
#28
amrita1983
closed
4 years ago
4
Result interpretations!
#27
GraceGrace1007
closed
4 years ago
16
MinION data
#26
woodoo46
closed
4 years ago
5
running RepeatHMM from virtual environment as suggested in issue 7
#25
avitalsteiman
closed
4 years ago
8
RepeatHMM and RepeatCCS
#24
wenluo711
closed
4 years ago
4
Input of UserDefinedRepeat
#23
zthornton96
closed
5 years ago
6
add reminder for installation
#22
liutiming
opened
5 years ago
2
not enough evidence to support the estimation
#21
wenluo711
closed
5 years ago
6
Installation issue
#20
MaestSi
closed
5 years ago
6
Question on customised files
#19
liutiming
closed
5 years ago
4
Update Makefile
#18
liutiming
opened
5 years ago
0
Error no information
#17
liutiming
closed
5 years ago
21
Genes not in hg*predefined.pa
#16
Langna
closed
5 years ago
3
strand parameter in user defined repeat
#15
drumdum
closed
6 years ago
2
ModuleNotFoundError: No module named 'Bio'
#14
efsalcedo
closed
6 years ago
24
Tandem Repeat Finder
#13
andyb3
closed
6 years ago
2
Reproducibility Question
#12
andyb3
closed
6 years ago
4
apply to exom sequence data
#11
tlu0918
closed
6 years ago
4
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