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Hello Dr. Strobes,
Very impressive method! I have a couple of questions regarding the Watershed tool.
From the [associated publication](https://www.science.org/doi/10.1126/science.aaz5900), the Wa…
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### Need
As a hospital geneticist I want:
- As many true variants as possible with as few false positive variants
- As fast as possible
- And as cheaply as possible
The new version of Sentieon:…
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Hello,
I'm happy to have stumbled across this project, it's very cool! I'm interested in contributing, and would like to apply this dataset for public health genomic surveillance
I have been int…
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We need to properly model genetic/genomic landmark locations.
For example: (current ZFIN refactor)
http://zfin.org/action/mapping/detail/ZDB-SSLP-980528-17
In ZFIN, we have mappings of different fea…
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I am attempting to fine tune and train a model to extract the fields highlighted in yellow in the sample reports here. My results are not good when testing the model and I'm looking for some guidance …
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Hi, Dr song
I want to see whether flanking sequence of genes in one gene family have CNS and "PAV", so I am wondering whether I can identify CNS in one species to set query and ref as same species.
…
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Hi @brianjohnhaas
Q1: I want to use ctat-mutations to find RNA Editing events. I have **only** RNA Seq data. Does your implementation find most of the variants around all genomic regions or does i…
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### Description
Manta has an option to use `--call-regions` argument and supply a bedfile to restrict the calling of variants to within this region. This sounds good for our TGA cases where likely mo…
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The input xxxx.g.vcf.gz file was generated using the BAM to VCF Cromwell pipeline: [https://github.com/broadinstitute/wdl-runner](url)
When I ran vcf_to_bq without --run_annotation_pipeline - it r…
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Hi!
I am opening my previous ticket again! Once more I listened to some talks in ESHG Vienna and I believe we should have these tools implemented in our analysis pipelines.
As I mentioned previ…