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These versions fix the `sedml.variable.modelReference` issue that Ion raise yesterday.
- `ghcr.io/biosimulators/amici:0.11.11`
- `ghcr.io/biosimulators/copasi:4.30.233`
- `ghcr.io/biosimulators/c…
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## Solvers to initially support
KISAO terms exist for each of these algorithms and each of their parameters
- `gillespy2.solvers.numpy.ode_solver.ODESolver` (`integrator`=`lsoda`): KISAO:0000088
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This question is for the GillesPy2 developers
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The images for gillespy2 and bionetgen and any other containers should be added back
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@briandrawert To support SED-ML, we need to know the SBML XPATH of each recorded result. Are the results always predictions of species?
More specifically, do the keys of `results_dict`
```
_, res…
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GillesPy2 has problems with this example because it imprudently replaces `ln` with `log` in rate law expressions. See StochSS/GillesPy2#459. This can be turned into an example that GillesPy2 can simul…
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related to relocation of repo, fix all links that reference gillespy2/gillespy2 to reference stochss/gillespy2 instead
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To enable #1602, we need to automate the generation of singularity images. There's multiple possibilities including
- Integrating this into the workflow for accepting simulators into the registry:…
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`gillespy2.sbml.SBMLimport.__get_math` does not translate rate law expressions correctly. The method needs to only replace the word `ln` with `log` rather than replacing `ln` with `log` everywhere. Ev…
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using the file [BIOMD0000000028.omex](https://github.com/biosimulators/Biosimulators_GillesPy2/blob/dev/tests/fixtures/BIOMD0000000028.omex) give the following error. The [BIOMD0000000297.omex](https:…