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Hello,
I'm trying to run MTAG with beta and SE, using the instructions from here:
**Note: If both the effect sizes and the standard errors are present in the input GWAS summary statistics, z is…
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作者您好，您的工作对GWAS和scRNA-seq结合研究非常有帮助
自己的配置如下：
R: R_4.2.2
Seurat: 5.0.1
ggpubr: 0.6.0
目前我在windows中的Rstudio下重复示例代码时遇到如下问题：
`
devtools::install_github("sulab-wmu/scPagwas")
library(scPagwas)
sy…
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Dear developers,
When running mtCOJO I am facing an error I have problems to solve.
My code:
Accepted options:
--bfile /home/all_snps
--mtcojo-file /home/mtCOJO/mtcojo_summary_data.list.txt
…
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Hello,
I am using version 0.5.5 of your software on a GWAS data on build 19 and my reference panel is also build 19.
However, the log file gives out some numbers which I am not sure if its something…
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Hi,
I am wondering whether I can find an optimal PRS model based on pre-selected variants of interest using PUMAS.
If so, could tell me what steps I need?
Thank you so much,
KJ
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@frhl These are comments/suggestions I wrote down when I was testing the current app version. I show them as checklist here but we can discuss to modify them as appropriate. I'm also starting to get i…
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Hi, MTAG programer,
I have got my analysis result successfuly, but I am confused about the final result. I combined two subtypes of disease which used different cases and same controls. So next which…
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I wonder where can we download GWAS file from public database with information in "GWAS_summ_example.txt"?
As we know there are several public GWAS database, like [GWAS Catalog](https://www.ebi.ac…
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Hi,
Thanks for the invaluable tools and tutorial resources you provided!
I am currently working with imputed data from the UK Biobank, and I have encountered a challenge regarding the storage si…
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After summary statistics of BMI being restricted to hm3 SNPs with LDHub filtering procedure, LOGODetect will produce error as showed in the figure. And I'd really appreciate it if you have any suggest…