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Per @RLovering 's suggestion - to accommodate Mediator subunits, that (presumably) don't all bind to dbTFs. This is likely the case for other coTFs.
New proposed def:
A transcription regulat…
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I am reading a paper (pmid:11927565) that concludes:
"TRM7 codes for a MTase that catalyses the formation of 2'-O-methylnucleotides at positions 32 and 34 of the yeast tRNAPhe, tRNATrp and, possibly,…
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## 5/12/2019
### Alternative Species
Downloaded the other species data in the directory `/scratch/jpm73279/04.lncRNA/06.annotate_other_species_2020-05-11` using the script `submit_fastq_dump_downl…
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https://mp.weixin.qq.com/s/zt-5JshP71ZX3OwPOsfagA
ixxmu updated
3 years ago
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This term is missing. It is similar to transcription corepressor activity.
To be completed with @colinlog
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The manuscript [Using multiple reference genomes to identify and resolve annotation inconsistencies](https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-020-6696-8#MOESM1) is a recent public…
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Currently we display a label from PRO, or the PRO id (It's different in different contexts).
The PRO display label looks like this:
binding section
https://www.pombase.org/gene/SPAPB1A10.09
a…
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term tRNA (cytosine 32-2'-O)-methyltransferase
def:
Catalysis of the reaction: S-adenosyl-L-methionine + cytosine32 in tRNA= S-adenosyl-L-homocysteine + 2'-O-methylcytidine32 in tRNA
child of
…
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Chromatin binding
* sir2, clr3: PMID:16079916
* pho7 PMID:23231582 GSE39499
RNA expression
* copper, iron: PMID:17477863
* copper iron phosphate PMID:23231582 GSE39499
* hydrog…
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For phosphorylation as an example, there may be many phospho sites on a sequence, resulting in a lot of isoforms. If max_isoforms is large enough, there may be too many isoforms to be considered; if m…