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Hi,
My usual CentOS6 server has an outdated libc.so.6 so I have to use a more recent OS. Sysadmin told me this cannot be updated, unfortunately. Anyway, on the other server (CentOS7) I downloaded t…
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Updating a recipe, which has `- zlib {{CONDA_ZLIB}}*` and `- htslib {{CONDA_HTSLIB}}*` as requirements, I find the following error:
`[ 54%] Linking CXX executable dng-call`
`/opt/rh/devtoolset-2/r…
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Hi-
I am using the recent samtools, htslib and the htslib-crypt4gh plugin.
Followed your tutorial.
But whenever I try htsfile crypt4gh:encrypted.bam, I get input/output error.
Any comments…
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Hello!
I am receiving errors like `malloc: Incorrect checksum for freed object 0x7fdf6c4066b8: probably modified after being freed` in my code, and I think it might be due to a bug in rust-htslib's…
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Hi everyone,
I'm quite new to writing Rust - and Cramino is my first Rust tool that I try to get in bioconda. However, it fails to build on osx, and if I am not mistaken this is related to rust-hts…
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Hi! Li Pan,
I tried to build PsBL according to the steps in readme.
I am working in a linux system. Initially `call_interaction.cpp` cannot find `htslib/bgzf.h` despite `htslib` is in my `$PATH`. I …
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Please consider updating this .travis.yml by forking this branch and then squash commits and merge into `sandbox`.
This will also help with my issue below:
Our cluster the install is quite a pain …
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Currently bioparser only supports parsing of the SAM format as a tab-delimited file. Implementing a parser that is htslib-compliant would not only allow parsing of BAM as well as SAM (possibly even CR…
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My guess doesn't work...
/opt/common/CentOS_6/gcc/gcc-4.9.3/bin/g++ -std=c++11 -I /opt/common/CentOS_6-dev/htslib/v1.3.2/ ppflag-fixer.cpp -L /opt/common/CentOS_6-dev/htslib/v1.3.2/ -lhts -Wl,-rpa…
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Using cached pysam-0.14.tar.gz
Complete output from command python setup.py egg_info:
'.' is not recognized as an internal or external command,
operable program or batch file.
'.…