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HI
I tried using `vk calc` to analyze a GATK produced VCF and got an error:
```python
Traceback (most recent call last):
File "/usr/local/lib/python2.7/site-packages/vcfkit/calc.py", line 1…
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When I do `bcftools view -i 'MQRankSum="."'`, then this record is printed:
10 67402 . C A 52.98 . ABHom=1;AC=2;AF=1;AN=2;BaseCounts=2,0,0,0;DP=2;Dels=0;ExcessHet=3.0103;FS=0;GC=41.65;HaplotypeS…
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Hi Cyriac,
with the previous version of vcf2maf I had no problem annotating hg19 vcf even with vep 82, but with the current 1.6.3 I am getting this error... I was trying to figure out if zoo make some…
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```
Single reads mapped as multiple segments may reveal indels and small
rearrangements. These can be detected by finding reads with split mappings to
the same gene, but where the segment mappings …
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When I do `clean package` and try to run the example from the README file, this is what I get:
```
$ scripts/guacamole germline-threshold --reads src/test/resources/chrM.sorted.bam --out /tmp/result.…
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```
Single reads mapped as multiple segments may reveal indels and small
rearrangements. These can be detected by finding reads with split mappings to
the same gene, but where the segment mappings …
-
```
Single reads mapped as multiple segments may reveal indels and small
rearrangements. These can be detected by finding reads with split mappings to
the same gene, but where the segment mappings …
-
-
```
Single reads mapped as multiple segments may reveal indels and small
rearrangements. These can be detected by finding reads with split mappings to
the same gene, but where the segment mappings …
-
```
Single reads mapped as multiple segments may reveal indels and small
rearrangements. These can be detected by finding reads with split mappings to
the same gene, but where the segment mappings …