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AndersenLab
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VCF-kit
VCF-kit: Assorted utilities for the variant call format
http://www.andersenlab.org
MIT License
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Can't install
#48
boutrys
opened
5 months ago
0
vcf2tsv cna't print header
#47
huipan1973
opened
6 months ago
0
problem with primer3 in both conda and docker
#46
shanmugavadivelps
opened
7 months ago
0
Running Docker version: "ModuleNotFoundError: No module named 'pomegranate'"
#45
ariellerjohnson
opened
1 year ago
0
Cannot find thermo path '/primer3_config/
#44
thomvesiri
opened
2 years ago
0
Muscle 5.1 no longer has "-maketree" command, breaking vk phylo
#43
William-Gibson-ig
opened
2 years ago
0
Memory Issues when running tajima module
#42
mwersebe
opened
2 years ago
0
Custom genome assembly?
#41
BayLab
opened
2 years ago
0
TypeError: '<' not supported between instances of 'int' and 'NoneType'
#40
selasphoruskershaw
opened
3 years ago
0
error while using docker image (andersenlab/vcf-kit:20200822175018b7b60d: TypeError: a bytes-like object is required, not 'str'
#39
laura-bankers
opened
3 years ago
1
Warning --sample option not given
#38
VivekTodur
opened
3 years ago
0
KeyError: b'AC' in Tajima'sD calculation
#37
mariesaitou
closed
3 years ago
1
fix biopython version
#36
samwachspress
closed
1 year ago
0
vk primer bio.alphabet error
#35
kimh11
closed
3 years ago
3
cannot get this to work
#34
herber4
opened
3 years ago
5
got an KeyError with the tajima.py
#33
JieGao-XTBG
closed
3 years ago
1
ImportError: No module named vcfkit
#32
vappiah
closed
3 years ago
4
error loading tabix index for building a region specific tree
#31
ccastane9
opened
3 years ago
2
TypeError Python 3
#30
sofsta
opened
4 years ago
2
Make VCF-kit work with Python3
#29
danielecook
closed
4 years ago
0
calculate Tajima'D on haploid
#28
AlexWanghaoming
opened
4 years ago
2
vcf2tsv error
#27
boboppie
closed
3 years ago
1
something wrong installing with anaconda
#26
Haoyuan17
closed
4 years ago
9
Conda install error
#25
danrlu
opened
4 years ago
0
Is it possible to plot the Tajima's D result?
#24
smallfishcui
closed
4 years ago
1
ImportError: cannot import name 'lev' from 'utils' (/Applications/miniconda3/lib/python3.7/site-packages/utils/__init__.py)
#23
joswald
closed
4 years ago
4
Exception due to misuse of numpy options
#22
aozalevsky
closed
1 week ago
1
The 'VCF-kit==0.1.6' distribution was not found and is required by the application
#21
DallasThomas
opened
5 years ago
2
issue with primer3
#20
amykwebster
closed
5 years ago
4
phylogenetic tree
#19
vinay104
closed
6 years ago
2
nothing to be generated
#18
DengHAU
closed
6 years ago
1
setup error
#17
oxidizer2001
closed
6 years ago
1
vk error on RHEL7
#16
beechwood13
closed
5 years ago
11
issues installing vcf-kit on Mac
#15
seraphim711
closed
6 years ago
1
No reference strain in output alignment file?
#14
nghait
closed
6 years ago
3
problems with PyFPE
#13
lroma84
opened
6 years ago
2
VK does not work with plink outputed VCF because the AC is empty
#12
andreyurch
closed
6 years ago
2
vk doesnot work on mac
#11
andreyurch
closed
5 years ago
5
vk setup errors
#10
mwhj
closed
6 years ago
7
vk calc syntax error
#9
asherichia
closed
6 years ago
1
Problem install VCF-kit
#8
CristianRiccio
closed
7 years ago
1
vk setup Error
#7
moko-moko
closed
6 years ago
1
pip install fail
#6
hoyonh
closed
7 years ago
36
No module named cyvcf2
#5
nuin
closed
7 years ago
1
vk phylo bug
#4
pthiru
closed
7 years ago
11
Error parsing GATK produced VCFs
#3
nuin
closed
7 years ago
6
Great
#2
danielecook
closed
7 years ago
0
Can I pip install this?
#1
tseemann
closed
7 years ago
2