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Hi,
Actually I tried to launch Linkage disequilibrium computation of 1000 Genomes reference panel with my own annotation data. However I had several times a memory Error from corSumVarBlocks funct…
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**[Original report](https://bitbucket.org/simongravel/moments//issues/56) by Aaron Ragsdale (Bitbucket: [aragsdale](https://bitbucket.org/aragsdale), GitHub: [apragsdale](https://github.com/apragsdale…
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Hi there
I am currently calling snps in ~400 samples using bcftools mpileup | bcftools call but it is running quite slow. I have seen others have tried to speed up the process via running mpileup/c…
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https://arax.ncats.io/?source=ARS&id=df3f226a-571a-4219-ba5e-a37b7040ee18
No predicates or categories, CURIE on subject
 using a VCF file generated through Stacks. Additionally, my colleagues (who are running Radiator on MAC-OS) also run into…
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OK, Biolink 2.0 (6/1 release date) has various changes that will affect KG2:
- `GenomicEntity` becomes a mixin
- `NucleicAcidEntity` groups DNA, RNA, etc.
- `ChemicalSubstance` -> `SmallMolecule`…
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Hello, I was trying make stats distribution plot for my snp data using pcadapt:
`pl6=plot(xclinvar, option = "stat.distribution", threshold = 0.1)+ggtitle('P_clinvar hg38 17076 SNPs')`
And getting …
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Hi, I have a question about LD regions in the "LD.wiki34".
The description is...
#' 34 long-range Linkage Disequilibrium (LD) regions for the human genome
#' based on some [wiki table](https://go…
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Hi, guys:
I still have some "design" questions on PRS. So, we start with a summary statistics file from a GWAS, called "discovery". Then, we use whatever methods (such as P+T or beta shrinkage) to …