-
We have included a mock community sample in our analysis.
This mock comprises 8 species.
Dada produces 273 ASVs for this sample.
When we cluster the ASV sequences with decipher they form 8 well def…
-
Do you have any additional datasets you like to add/(have added) to `microbiomeDataSets`?
@antagomir @dombraccia @microsud @fionarhuang
Anything against submitting the datasets first after some…
-
Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/MPiet11/BiodivoTools
Confirm the following by edi…
-
I am wondering what would be the recommended coverage of illumina paired-end short read to use for correction. In my case I have ~270x short read coverage of the genome I am intending to assemble de n…
-
How do we begin annotating the microbial taxonomy with morphological and physiological properties? For example:
* [obligate aerobes](https://en.wikipedia.org/wiki/Obligate_aerobe)
* [facultative ana…
-
Hello,
I'm wondering if there is any interest in adding a feature for a conversion tool from biom data to the [AnnData](https://anndata.readthedocs.io/en/latest/) format. This format is used by man…
-
```
Return-Path: sdavis2@mail.nih.gov
X-OriginatorOrg: mail.nih.gov
--_004_MN2PR09MB59154FBCF7EE8985000DD9F7CA3D0MN2PR09MB5915namp_
Content-Type: multipart/alternative; boundary="_000_MN2PR09MB5…
-
Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/zoecastillo/microbiomeExplorer
Confirm the follow…
-
@kubu4 do you know which version of MEGAN6 you used to make transcriptome 3.1 (bairdi)?
Also, do you know of the citation for it?
-
Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/FrederickHuangLin/ANCOMBC
Confirm the following b…