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Thank you for the useful tool!
However I'm running into some odd behaviour when mapping to different numbers of genomes. I mapped once to bacterial genomes, and then again to bacterial genomes + eu…
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I have the following output from my paired end FASTQ files. This output came after I ran "bash runbatch_Wochenende_reporting.sh
 that refer to the elements that are used in the accretion process, because the o…
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From `centrifuger` paper, I found it can perform strain level profiling. How to achieve it? Is this achieved by assigning the `seqID` column in the `classification.tsv` file to the corresponding strai…
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In the properties table for each element it says how many stable / unstable isotopes there are. It will be really useful to have instead the masses of the most important ones and their relative abunda…
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您好，
我在运行diting的最后生成热图时出现如下错误提示：
2022-05-26 13:56:34 [INFO ] **********[8/12] Merge KEGG annotations***********
2022-05-26 13:56:34 [INFO ] Merge KEGG annotations
2022-05-26 13:58:06 [INFO …
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I runned this script:
library(readr)
library(ggpicrust2)
library(tibble)
library(tidyverse)
library(ggprism)
library(patchwork)
# Load necessary data: abundance data and metadata
abundance_f…
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Hi,
I have been running simper without problems
simper(fourth_root_sqrt_OTU_abundances_relative, AGDX_samples$Fjord, permutations=1000)
However, when I tried to repeat the analysis with simper.…
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Hello Benjamin,
I have two questions for you regarding the prevalence function in Decontam at ASV level.
QUESTION 1:
I assume that the control samples should be the same (resemble each other …