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I am trying to create a VCF from an assembly graph using `vg deconstruct` for [COVID-19](https://workbench.lugli.arvadosapi.com/collections/lugli-4zz18-xdihpa8nzv906l8):
```
vg view -F SARS-CoV-2.…
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Query: A27507C, T22928C, C21998A, G26567T
First sequence: 2023-03-27
Latest sequence: 2023-08-16
Countries: Austria, Canada, England, Northern Ireland, Scotland, Ireland, France, Japan, Netherlands…
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Hello again!
I am trying to use Nano-Q for my SARS-CoV-2 sequences analysis, but when the process finishes, no files have been created and stored inside the "Results" directory. I am using the MN9089…
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This step follows on from Issue #2 where you will have prepared your ligands from SMILES strings using Gypsum-DL. For this virtual screen I have used the [SARS-CoV2 helicase - holo complex, nsp13](htt…
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# Protein Inception | Liam's Blog
Protein design by hallucination. DeepDream, Markov Chain Monte Carlo (MCMC), KL divergence, gradient optimization, scaffolding functional sites, SARS-CoV-2 receptor …
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Please update the Introductory section of the manuscript with the following information
1. Importance of SARS-CoV-2
2. Current methods of SARS-CoV-2 variant classification
3. Limitations of the c…
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I want to use pangolin naming another vrius, but I don't know how to change the training dataset of pangolin how to re-train the model . I don't know if it is possible, but I think if users has the a…
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## XBB.1.9* Lineage Tracker
### L455F
- [ ] FL.16 > T22928C(**S:F456L**) > A13913G(ORF1b:N149S), T16029C > G960A(ORF1a:R232H), A2589G(ORF1a:E775G), C2892T(ORF1a:A876V), _rev_T3511C_, T4008A(ORF1…
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Long story short the tags of the form `biochemical-activity_-_computed--pIC50_msk` are not currently populated with enough information to disentangle model versions from one another. For example `bio…
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As I've been working on #549 to add support for SARS-CoV-2 references, I've had some trouble with running out of memory. I think it's partly that I'm running on equipment with less memory than I usual…