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Hi, firstly thank you for creating the nabseq_nf pipeline.
I've been running the nabseq pipeline on Seqera/Tower and noticed that the biggest bottleneck is the `subset_aligned_reads ` step, which f…
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### Description of bug
Hi!
Running v1.24 from bioconda. I'm wondering if https://github.com/MultiQC/MultiQC/blob/9fa4cc6a969fff0c6cd0be09904e894bbee98558/multiqc/plots/table_object.py#L71 and/or…
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## Bug report
_[Reported](https://nextflow.slack.com/archives/C02T98A23U7/p1730104468259449) in the nextflow-help Slack channel._
Processes that need to access data in several containers receive a…
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Add new validation checks for various v24.1.x entries:
- [x] Do not allow deployment to occur with Seqera Platform container version:
- [x] v24.1.0
- [x] v24.1.1
- [x] v24.1.2
- […
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### Description of the bug
Once the pipeline finishes and some email is set, it will not finish sending it. Attached the logfile of whats going on in the background, doesnt matter if i keep the hook_…
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When interacting with any Google Cloud compute environment the following error is raised:
```
> tw compute-envs export -w 162690105070735 -n Google_Batch
Exception in thread "main" org.graalvm.…
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## Bug report
If one runs `nextflow run` with `-with-report` or `-with-trace` (and provides a "main" nextflow workflow file as input, such as `main.nf`), then one gets the error:
```
No projec…
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### Description of feature
Related to https://github.com/ewels/MultiQC/issues/542 but a simpler concept, to get us started.
New config option + back end code to allow sample name cleaning that is …
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Leveraging the `data.external` technique implemented in [https://github.com/seqeralabs/cx-field-tools-installer/pull/86/files](https://github.com/seqeralabs/cx-field-tools-installer/pull/86/files), it…
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### Description of bug
I have a bunch of "test" samples to develop a bacterial WGS pipeline against. Part of that is running Kraken2 to profile the taxonomic composition of the reads.
I found that…