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Hi,
in the method section of the Stoeckius et. al. CITE-Seq paper, the ADT CLR normalization
is performed cell-wise, while the Seurat genesCLR normalization is performed gene-wise. Is this the 'sl…
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Hi,
I'm tryining to run deepcell-tf using the "Watershed Distance Transform for 2D Data" notebook as python script on some of our images. For now I'm only using 2 sets of nuclear stain images each …
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Cross-posted from https://redmine.dataone.org/issues/8775
Bryce Mecum wrote:
> In the current system, EML documents with taxonomic coverage get indexed into fields such as `species` if they contai…
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Hi,
I read your paper about stain specific standardization (https://www.ncbi.nlm.nih.gov/labs/articles/26353368/)
, and I found that the code is implemented in this ASAP.
Would you tell me how to…
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home/liuzhisheng/Stain_Normalization/stain_utils.py in ()
11 import numpy as np
12 import cv2 as cv
---> 13 import spams
14 import matplotlib.pyplot as plt
15
ImportError: N…
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LinAlgError Traceback (most recent call last)
in ()
1 n=stainNorm_Macenko.normalizer()
----> 2 n.fit(i1)
3 normalized=utils.build_stack((i1,n.transform(i…
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{
"body": {
"sections": {
"section": [
{
"@id": "sec1",
"section-title": "Introduction",
"para": [
{
…
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n=stainNorm_Vahadane.normalizer()
n.fit(i1)
normalized=utils.build_stack((i1,n.transform(i2),n.transform(i3),n.transform(i4),n.transform(i5),n.transform(i6)))
stain_utils.py:143: RuntimeWarning: di…
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![2](https://user-images.githubusercontent.com/19258612/37971026-8aa38ca4-3207-11e8-8e01-2…
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to foster community involvement - some richer sample code beyond MNIST should be tackled.
Generative Adversarial Networks is a hot topic amongst ML - and some sample code using swift should help enco…