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If the py process cannot be started, the plugin should give a reasonable error message to explain what went wrong. Currently it just throw an runtime exception.
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This component is not currently available from maven.scijava.org, because one of its dependencies, `de.csbdresden:StarDist_`, is not deployed there. We need to make `de.csbdresden:StarDist_` available…
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All the settings for the Style framework are saved n YAML files, within ~/.mastodon` folder. They can be manually edited, but if the edition is incorrect, Mastodon will crash and does not recuperate. …
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I am currently writing a few Trackmate scripts to automate my image processing that I had using the GUI for initially.
It has dramatically speeded up my work but I love the "Track Statistics" CSV tha…
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Hello,
I am using TrackMate a lot to track bacteria cells. The quaIity of the segmentation is significantly better with Omnipose compared to Cellpose. I usually run Omnipose on my time-lapse data i…
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Hello, it looks like some of the imports from the scripts don't work anymore - the three imports fiji.plugin.trackmate.tracking.LAPUtils, fiji.plugin.trackmate.tracking.sparselap.sparseLAPTrackerFacto…
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It seems to always give me ‘Found 0 spots’ and Java error:
java.lang.IllegalArgumentException: Stack argument out of range: 1
at ij.ImageStack.getProcessor(ImageStack.java:310)
at net.imglib2.im…
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See e.g.
- https://forum.image.sc/t/trackmate-cellpose-not-working/63950
- https://forum.image.sc/t/no-spots-found-using-trackmate-cellpose/68743
Minh-Son Phan found a fix.
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@tinevez said you wanted more issues to be filed https://twitter.com/jytinevez/status/1329023718190931968
It would be wonderful if it would be possible to use Mastodon directly on the currently ope…
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The page https://imagej.net/plugins/trackmate/extensions/trackmate-helper is currently pointing to the wrong source code on GitHub, because the artifact is set as `sc.fiji:TrackMate` where it should b…