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Hi there.
According to the UKBB tutorial, I was a little bit confused.
Can I build the Step 1 prediction model for each chromosome (and run Step 2 for each chromosome using the chromosome-level …
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Hello,
There is no section **UK Biobank GWAS Results** in the README page.
How could we access to GATE results ?
Thank you very much
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When using a linux serve(4 core & 8G) to run this job on the example data you suggest, I can' t get the result after around 5-6 hours cost. And the snakemake log shows the info as below:
Could yo…
Bxbc updated
3 months ago
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Data associated with this project https://www.medrxiv.org/content/10.1101/2023.12.06.23299426v1 has been shared with Open Targets and needs ingesting into the GWAS Catalog. The data is presented in se…
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Hi Vladimir,
Thanks for making this awesome model. I am very impressed and interested in the results.
In the readme, you mentioned 2 types of background, synonymous mutations and non-coding on…
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I am trying to porting the visualization of the source code [L1-regularized logistic regression models for predicting asthma](https://github.com/tdhock/hla-asthma/blob/a3dc13ac5a02302b75eb59538b6c8f63…
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HI GCTA developer,
Thanks for the great tool! I ran gcta --reml on UKB data with 64 cores and 512G memory and got the following error:
> Accepted options:
--reml
--grm all ###all.grm.bin is …
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# TLDR
In the `participants.tsv` file, the `age` and `sex` columns are sometimes not well defined, and this leads to (unnecessary) issues on the side of tool developers (and thus eventually the use…
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Dear researchers,
Thank you for developing such an amazing tool. We recently conducted PRS-CS among UK Biobank (original genotypes without imputation), among 400,000+ SNPs, only 140,000 left for anal…
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Hi! I like topr a lot and hopefully will be using it in future manuscrips!
Right now I am struggling with locuszoom, because as many SNPs besides my "target" are in perfect LD with this target, the…