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What about create a new function to return multiple codon mapping?
For example, when we have amino acids F, we return like this:
```
{ 'F': ['UUU', 'UUC'] }
```
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Hi!
I would like to request 11 new terms to be added to EFO. I haven't found it in other ontologies for it to be imported. They are endpoints from the latest Finngen release. The parent term is a s…
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Hello.
This is awesome work.
I have also been working on this. I have run some tests with the espaloma approach using the method described here. [https://github.com/choderalab/espaloma/issues/192]…
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I am trying to design an interface, but the amino acids I am getting are almost completely polar, which is weird for an interface. Am I missing something? Is there something one should consider when d…
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I wonder if it's suitable for full sequence?
When I test the test_data and change it to amino acid genotypes, it works well. However, when I elongate the test sequence to 242 aa, it can't work.
A…
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https://github.com/Bahler-Lab/yogy/blob/master/YogiUp/run_db.csh#L106
I don't know where to update the following two files:
gunzip functional_descriptions.WS190.txt.gz
```
WBGene00000001 aap-1 Y…
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I'm querying my .gff files to pull out sequences for certain genes but it is giving me output in amino acids. I saw in a supplementary document that you can get this outputted in nucleotides but the d…
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A bug in Mutalyzer's Normalizer results in display of an incorrect affected protein reference sequence (see https://mutalyzer.nl/normalizer/NC_006585.3(XM_014111995.2):c.462_463inv).
The affected pro…
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Hi, I'm currently trying to compute the Dictionary of protein secondary structure (DSSP) secondary structure assignments for peptide that is capped with ACE and NME residue. mdtraj supports this calcu…
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Can we show the amino acid position below the amino acid letters. It will be useful to the users. jkv
https://app.pageproofer.com/to/note/235872