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Full reindex on DEV to test out the round 5 efficiency updates from Karl's changes, but encounter hundreds of such errors:
```
[2024-06-22 07:00:07] ERROR in es_writer:95: Failed to write doc of u…
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Hi, I have been generating Seurat 5 objects to run in the latest version of SCPA (1.6.1) and get the above error when using the compare_pathway() function.
Here are some details.
1. The seurat…
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**Query:** [occurs.json](https://github.com/NCATSTranslator/testing/blob/main/ars-requests/not-none/1.2/occurs.json)
**PK:** [d6278abd-1344-4908-b8d4-b987286ae5bd](https://arax.ncats.io/?r=d6278abd-1…
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When downloading this file ('iatlas-ici-features.tsv') from the Synapse portal it's not given in the description what the meaning of the columns are.
There seem to be columns linked to various stu…
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I have another question regarding the dataset building that will feed the prototypes of novels classes.
My use case is to annotate new images with already annotated images that I will use to build my…
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The associations from burden results in the AZ Phewas Portal were updated end of last year.
The update aggregates the ExWAS results from a cohort of 450k to **470k** people.
We want to ingest this
…
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At the BIDS-ComputationalModels meeting, it became pretty clear that a wide range of applications require (or would at benefit considerably from) the ability to read in generic n-dimensional arrays fr…
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# NER
1. TokenClassification
https://huggingface.co/docs/transformers/tasks/token_classification
2. Background report
3. try NER
4. view the code of BERN2
## Models
run these mode…
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Rather than patching
https://github.com/DataBiosphere/azul/issues/2873
https://github.com/DataBiosphere/azul/issues/2870
we [think](https://humancellatlas.slack.com/archives/C01360XN04S/p16191828512…
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## Why?
It's hard to work with quantities (value + UoM) in RDF and SPARQL.
There are about 10 UoM ontologies:
- the worse of them are just a list of units
- the better of them also add dimensi…