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Could you help me with the error below?
I am running CirComPara for the docker image that you have made available.
label: plot_circrnas_per_gene (with options)
List of 3
$ echo : logi FA…
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How to identify and quantify circRNAs spanning more than 2 exons? Identifying circRNAs spanning 2 consecutive exons is straightforward, since they contain only one backsplicing junction. Those spanni…
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Dear author,
I want to find out some translation evidence from predicted sequence, such as lincRNA or circRNA, I have got the fasta file of those sequence and their position in genome.
The …
PSSUN updated
5 years ago
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Hi,
I want to enquire if the RNA prep kit _**TruSeq Stranded mRNA Sample Prep Kit**_ is supported by DCC. Is there any evidence supporting this idea?
According to the chapter _**Deep Computatio…
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Hi,
I used STAR to align my paired-end reads and followed the pipeline from 'Align-Parse-Annotate'. I got a list of predicted circRNAs that perfectly match with annotated genes. The results looked …
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Hi Sir
I tried to install circtools on my PC(ubuntu 16.04) and I got the following error message. Could you help with this? Thank you
$ python3 setup.py install --verbose --user
running install
…
circR updated
6 years ago
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DCC version 0.4.4
GENCODE v27 annotation for GRCh38
STAR 2.5.3a indexed GRCh38 with GENCODE v27 annotation
I run DCC after mapping the stranded paired-end ribodepleted RNAseq data in the three p…
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How are single exon genes / circRNAs treated when computing the enrichment in contrast to the linear genes?
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In addition to the overview plots, a "Top 10" plots with one plot per circRNA/RBP would be helpful.
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We should probably change the definition of all the GO:0006412 translation and downstream terms (GO:0006417 regulation of translation etc.)
A number of publications are reporting that circular RNAs…