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## Description
The cell_detector.git couldn't be cloned. The error message is shown below:
```
git clone ssh://git@aicsbitbucket.corp.alleninstitute.org:7999/assay/cell_detector.git
Cloning into '…
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I was getting the error below. The reason for this error was stated to be incorrect coverage given as input. I thought that I had estimated coverage properly. My genome is ~650 Mb. For the sample fail…
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Hi,
we are trying to include flowAI into our pipeline analysing mass cytometry samples. But I get this error:
>Quality control for the file: 1
>Error: cannot allocate vector of size 4538.4 Gb
…
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Currently, GMMClassifier always uses the same number of components to fit a model on each class.
The number of components providing the best "fit" for the data is rarely the same across different c…
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[Color compensation](http://bitesizebio.com/13696/introduction-to-spectral-overlap-and-compensation-flow-cytometry-protocol/) is necessary for applications in which multiple fluorophores are used in t…
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We are running SCAFFoLD for the first time.
We can successfully Run Clustering (files are generated) but when we try to Run SCAFFoLD Analysis we get an error message (Error: attempt to set an attrib…
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I recently read about a new non-linear dimensionality reduction algorithm called UMAP ([github](https://github.com/lmcinnes/umap), [arxiv](https://arxiv.org/abs/1802.03426)), which is much faster than…
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Current normalization tools in pytometry use the FlowKit implementation and are FlowJo input compatible, but could use a speed up, especially the functions for logicle and biexponential transformation…
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Hi!
If the training set is from healthy controls and the hypothesis is to discover novel clusters (using Diffcyt) that occur only in cases but not in controls, could CytoNorm pre-processing wash-off …
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I now have phased nanopore reads from nPhase. Thank you very much for the tool and your help so far.
Now, the task is to generate a first haplotype-resolved assembly. The phased reads are distribu…