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saeyslab
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CytoNorm
R library to normalize cytometry data
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Any plans for a python implementation?
#45
hrj21
closed
4 weeks ago
5
Reading fcs files generated through PeacoQC by Cytonorm
#44
Shuaiwei-Wang
opened
3 months ago
0
cytonorm error in if (any(idx)) { : missing value where TRUE/FALSE needed
#43
Heather-WHH
opened
3 months ago
2
Arcsinh transform with a cofactor of 150 for Cytek Aurora data
#42
rohitfarmer
opened
11 months ago
1
Error in the step of training the model
#41
ctjimmyhsu
opened
1 year ago
2
CytoNorm for anaconda install
#40
jacobHog
opened
1 year ago
3
Not a real issue, but rather I just don't understand how to read the testCV function results. Help?
#39
Diana-88a
opened
1 year ago
1
Normalization question
#38
fbenedett
closed
1 year ago
2
CytoNorm by Flowjo=> No normalized files created
#37
BaptLabRight
opened
1 year ago
7
prep.cytonorm does not keep original cellular.cols columns
#36
gosh-squash
opened
2 years ago
0
Differential marker expression after using Cytonorm
#35
singlecellfan
opened
2 years ago
0
CytoNorm not working in R 4.2
#34
isabelapedroza
opened
2 years ago
1
Add support for flowSets in CytoNorm
#33
DillonHammill
closed
2 years ago
1
What type of data should be used?
#32
mattvtcea
opened
2 years ago
1
Error in t.default(data) : argument is not a matrix
#31
LenaMayer
opened
2 years ago
0
no output on cytonorm
#30
jjoel212
opened
2 years ago
1
testCV() Error in t.default(data) : argument is not a matrix
#29
SameOldSamOld
closed
2 years ago
4
Cytonorm creating highly negative or very large values
#28
hrj21
closed
2 years ago
6
combine cytonorm with PeacoQC?
#27
onecarbon
closed
3 years ago
2
script is interrupted and doesn't produce output
#26
ic23oluk
opened
3 years ago
0
A few more updates for latest FlowSOM version
#25
jacobpwagner
closed
3 years ago
0
Update needed for FlowSOM object update?
#24
jacobpwagner
closed
3 years ago
3
removeOriginal and prefix = ""
#23
artuurC
closed
3 years ago
1
Error when normalizing one channel
#22
artuurC
opened
3 years ago
0
License missing
#21
andreas-wilm
opened
3 years ago
0
FlowSOM fail on new normalized FCS files
#20
EAC-T
opened
3 years ago
5
K-mean clustering instead of FlowSOM
#19
EAC-T
closed
3 years ago
3
How to specify which batch is good?
#18
EAC-T
closed
3 years ago
0
License and version
#17
abotzki
closed
3 years ago
3
script is interrupted
#16
kaloshi
opened
4 years ago
2
Choosing appropriate reference control
#15
Troylimyj
closed
3 years ago
3
nClus parameter not working
#14
emmanuelaaaaa
opened
4 years ago
3
Skipping the clustering
#13
bioguy2018
opened
4 years ago
3
testCV error
#12
emmanuelaaaaa
closed
3 years ago
4
Clustering fails after CytoNorm
#11
vivek-verma202
closed
4 years ago
2
Could CytoNorm impede discovery of novel clusters?
#10
vivek-verma202
opened
4 years ago
8
Less then 50 cells in batch17 (42). No quantiles computed.
#9
algebio
closed
4 years ago
2
Code proposal
#8
SamGG
opened
4 years ago
0
README.md
#7
SamGG
opened
4 years ago
0
Typo
#6
SamGG
closed
4 years ago
2
some markers show artefacts after normalisation
#5
JPGranizo
opened
4 years ago
2
Infinite max range on normed FCS files
#4
emrizzi
opened
4 years ago
5
CytoNorm for fluorescent flowdata
#3
DomenicoSkyWalker89
closed
4 years ago
5
Error in rep(NA, (width - length(x))) : invalid 'times' argument
#2
SansMorel
opened
4 years ago
4
Error: 'GetClusters' is not an exported object from 'namespace:FlowSOM'
#1
SansMorel
closed
4 years ago
3