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## The need
When using `anvi-script-visualize-split-coverages` I realised I'd like to visualise differential coverage for individual genes or operons across samples. This is especially useful for m…
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## Issue Summary
Hi Nuno,
I've encountered some issues with the cTRAP WebApp and the R package. Here are the details:
### WebApp Issue:
The WebApp version of cTRAP, hosted [here](https://c…
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Can your script support LFQ phoshphoproteomic data generated from fragpipe. I have used two workflow in fragpipe, LFQ phospho and Labile_phospho and generated combined result for ptm site, peptides an…
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Hello,
I would like to ask about current implementations towards testing patterns between conditions but within the same lineage.
Basically a question that I would like to answer would be wheth…
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```julia
@parameters t
@variables i(..)
Di = Differential(t)
Ii = Integral(t in DomainSets.ClosedInterval(0, t))
```
it is only processing a simple expression with the variable of NN
```julia…
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My goal of this exercise is to be more familiar with Differential gene expression with RNA-seq.
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I'm trying to use the function run_viper to calculate transcription factor activity based on an earlier differential expression analysis I ran but running the following line:
tf_activities_stat
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Really great work with milo!
We have a study where we have two time points across from the same donor which we are interested in comparing across treatments. In limma, we can take advantage of the b…
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Read this paper: https://arxiv.org/abs/2402.06079
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I have a loom file and want to perform differential expression analysis. How should i proceed?