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Allow the users to interactively select (with visual support) the DWI volumes that are bad and thus need to be removed
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A `gcc` related error occurs in GPU machines `grx03` and `pnl-maxwell` when `psutil` is attempted to install as part of `conda` environment inside `- pip:` block. They both have `gcc -V`:
> gcc (GC…
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#### Traceback
It probably only occurs with `environment_gpu.yml`:
```vim
(dmri_seg) [tb571@grx06 cnn-test]$ ipython
Traceback (most recent call last):
File "/data/pnl/soft/pnlpipe3/miniconda…
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This is confusing, since this is not a text object. It should save as .py (or at least allow the user to specify the extension).
![image](https://github.com/user-attachments/assets/3b8a2f96-7447-4…
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Hello,
I am attempting to use the `datalad-nda` CLI in order to produce a datalad dataset based on the 09 2020 3165 ABCD release found on NDA. I have the manifest as an uncompressed text file, so I…
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Hello Developers! I am running QC pipeline for my DTI files. However, I am facing issues with the execution. I have tried updating my packages to latest versions but still no help with the issue.
…
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Hello !
Are you going to release v2.0.2 and push it to pypi soon ?
Thank you in advance
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**Describe the bug**
Where DWIs are acquired with sagittal slice orientation, the saved `bvecs` are antipodally reflected with respect to the diffusion sensitisation gradients that the sequence was…
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With python 3.8 I currently see:
```python
Treating this as a non-FLAIR scan as instructed.
Traceback (most recent call last):
File "git/dmri_segmenter/brine.py", line 35, in debrine
obj = …
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quick-and-dirty documentation:
First, make sure to select the correct interpreter: SHIFT+CMD+P, then select SCT's conda:
![image](https://github.com/spinalcordtoolbox/spinalcordtoolbox/assets/24…