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http://doi.org/10.1038/srep19598
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I would like to propose few changes to the `Bio.motifs.meme` parser:
- [ ] Reading and Storing background frequencies
- [ ] Counting (and storing?) `TRAINING SET` sequences
I have a particular use ca…
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Hi,
I've tried MOFA with several datatypes, some having ~50 samples while others have 15 or 22 samples.
Here's an overview of the data:
![image](https://user-images.githubusercontent.com/2590…
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Observing this error when running MLPlan in cluster experiments:
```java Error class: java.lang.IllegalStateException
Error message: Timer already cancelled.
Error trace:
java.util.Timer.sch…
fmohr updated
3 years ago
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Hi there,
Thanks for the tool!
When I tried the meshclust 3.0, I got the core dump error, do you have any suggestions for this? thank you!
The compute-node of the cluster has 56 cores (112 t…
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Hi all,
This is such an awesome review, and i'd love to use it as a basis for teaching, but i've had to jump back-and-forth through sections, as the current structure doesn't flow as naturally for a …
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Instead of inputting a 17-bp sequence flanking an SNV, can we build another format to suit for Indels?
Can we input a table of two columns while the left column storing WT sequences and the right …
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Almost all genome assemblies have sequence gaps across which it is important to be aware of when reviewing annotations which may be partial because they extend into a gap of have internal sections mis…
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Hi, thanks for your great work. I wonder in the training process, why the sampling is necessary and what is the consideration of sampling sequence number, thanks a lot.
```
Each training sample of…
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Hello again,
I have been using your tools for some time and now I would like to know more about how you designed your model model.dp2.CNN.arabnrice2-1_120m_R9.4plus_tem. bn13_sn16.both_bilstm.epoch6…