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Hi,
I have tried generating tab file by pasting all the filenames and paths in excel and later converted that CSV file using this command.
`sed -e 's/,/\t/g' input.csv > input2.tab`
and then …
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Hi everyone,
I've been running the aMeta pipeline for over a week (I have many samples) but it got stuck in a step for days. I cancelled the run and then I run it again with --rerun-incomplete.
…
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Hi!
I noticed, that when iRep_filter.py is run twice (e.g., first collating genomes, then samples), the coverage information gets lost.
Here is a minimal example:
input: [a.txt](https://githu…
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I was trying to download viral reference genome while exercising the 'Advanced FASTQ processing' section of the biostar handbook. Here are the commands I run;
wget -nc http://data.biostarhandbook.c…
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Trying to run CAMISIM to generate a very small test metagenome data set with a mixture of eukaryotic and prokaryotic genomes to test a pipeline with, following the example in the usage guide. I am get…
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Your query File:
/Data/NGS_1165_Circos_genomes/genome/Bacillus_paralicheniformis.fna
--------------------------------------
Multi-FASTA detected, Rewriting headers
Initializing XML output..
R…
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Hi,
Thank you for developing such a really great method and very cool study tool!
I was able to run SMEG through singularity installation and changed download_genomes.sh line 4 to "wget ftp://ftp.…
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Example using three viruses from https://github.com/pyani-plus/pyani-plus/tree/main/tests/fixtures/viral_example
```console
❯ ls *.f*
MGV-GENOME-0264574.fas MGV-GENOME-0266457.fna OP073605.fasta
…
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Hi,
I am new to using bcftools +liftover, I want to liftOver from hg38 to hg19.
However, I get the error:
"Error: the reference allele GT does not match the reference NN at..."
I converted my …
ktg25 updated
2 months ago
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Hi
I am using docker image for analysis. But Makefile is not running in one go, it is stopping after first step.
rsat_user@cde778d90cbd:~/rsat_results$ make -f peak-motifs.mk
Creating the result…