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--sjdbOverhang ReadLength-1 when building index, so the index in this file, is it made by 150 - 1 or some others?
if I want to use GRCh37_gencode_v19_CTAT_lib_Apr032020.source.tar.gz, how should I do…
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Hi, ya dong:
I use deSALT to align human ONT cDNA 1D reads to hg38 genome, but I find no supplementary alignments in the sam file.
This is my command:
deSALT aln -t 40 -l 14 -s 2 -x ont1d -T inde…
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**Name**
Shivani Golem
**Occupation (Optional)**
Associate Professor; Director, Quality Assurance and Patient Safety, Genomics Diagnostic Division; Medical Director, Cytogenetics
**Professiona…
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I think it'd be helpful to have a feature similar to the dryrun parameter ([ref](https://github.com/biothings/biothings_explorer/blob/main/docs/REFERENCE.md#dryrun), [issue](https://github.com/biothin…
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I would like us to collectively consider and decide on the term we want to use for the concept we currently describe as "Factor". I think there are better terms we could use that align with the commun…
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Hi,
I just observed that STAR_fusion is giving the following error when I kept the "ctat_genome_lib_build_dir" as a symbolic link in the current directory.
`Error, cannot locate genome_lib_dir:…
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I am trying to prepare the dog genome for fusion gene searching, but PATH errors occur `prep_genome_lib.pl` in any version of STAR-Fusion (from v1.6.0 to v1.10.0). I am getting stuck in dfam and pfam …
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I'm using the latest mfannot via docker image.
I'm annotating a fungal mt genome with [genetic code 4](https://www.ncbi.nlm.nih.gov/Taxonomy/Utils/wprintgc.cgi#SG4), and some of the ORFs were probl…