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I am trying to do an annottion without RNA-seq evidence and am running into some issues.
**Version**
`funannotate v1.8.3`
**Input*'
`funannotate predict -i $input -o $outdir --species $species…
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- placeM Integration
- Kurzbeschreibung, "warum das ein
wichtiger/schöner/spannender/interessanter Ort für Jugendliche in
Greifswald sein könnte"
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**{augustus --species=bug adjust_500.test | tee firsttest.out}**
The adjust_500.test is gene_bank format after using gff2gbSmallDNA.pl and randomSplit.pl.
Then i used etraining training new species…
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In GitLab by @jlion on Jan 31, 2020, 13:56
Previously, the Helias-5b reference point was used as a basis for scaling laws within stcoils.
Now the in #966 introduced stellarator `type` is used to sto…
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Hello. I am trying to put the output of a free-boundary VMEC run onto a 3D grid like MGRID’s. On VMECwiki I see the description of EXTENDER which seems to do this. However I could not find EXTENDER in…
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**Are you using the latest release?**
I'm trying to use funannotate 1.8.0 from the python3 branch (commit 8e2e0a1) inside a singularity container. I installed funannotate inside the container with …
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Data:
```
Ahlbeck
Albinshof
Alt Brüssow
Alt Kosenow
Alt Negentin
Alt Pansow
Alt Sanitz
Alt Teterin
Alt Ungnade
Anklam
Anklamer Fähre
Auerose
Balm
Bandeli…
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I am running into an issue where, after building a hal file for 4 species using cactus, then splitting into mafs with hal2maf_split.pl , running augustus in comparative mode leads to the following:
…
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Reinstalled BRAKER today. Existing Genemark-E* was 4.0.0, updated that to 4.59 (with a new key in .gm_key), then did:
```
module load braker
cd example
wget http://bioinf.uni-greifswald.d…
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Hello, I checked on the doc and I did not see any option in order to set the desired number of cpu for a run, does it exists?
Does Augustus run only in 1 cpu / run or does it take all the cpu avail…