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## Expected Behavior
Running linclust with with --min-seq-id 1.0 -c 1.0 clusters identical sequences
## Current Behavior
Non-identical sequences are clustered
## Steps to Reproduce (for bugs)
…
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Hi,
when I run this command to create my fastq database the processus stopped always when it reached 362 Mio sequences processed.
`mmseqs createdb $(find /media/sf_a8de220a-fde1-4b79-8b3f-c186f5…
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## Expected Behavior
I need to run easy-cluster.
## Current Behavior
With some combinations of set of sequences and min-seq-id parameter, easy-cluster fails. It seems another condition is th…
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Hello,
I’m trying to run RNAseq data through atlas v2.0.1 for metatranscriptome analysis. I’ve tested both assemblers and have ran into different issues (see logs below). I’ve been advised that the…
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After clustering I want to see the alignments of all sequences within a cluster, but using the align command I only get the alignment of each member to the representative.
Is there a way to see the a…
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Hi
I am trying to compile the MPI version of MMseqs2 and I am getting the following [error](https://gist.github.com/genomewalker/ff89e56ea3435429f9d76f43e1646ca8)
## Expected Behavior
Should com…
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I'm using `mmseqs2 7.4e23d h21aa3a5_1 bioconda`, and I'm trying to taxonomically classify a set of ~4 million representative AA sequences (generated by `plass`, clustered with `linclust`, then us…
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I'm running `mmseqs map`, using a simple test run command: `mmseqs map --threads 24 -s 2 -c 0 MY_queryDB MY_targetDB MY_outDB MY_tmp_dir`, and I'm getting the following output + error:
```
mseqs…
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I was interested in trying the algorithm LINCLUST for _de novo_ clustering of a set of nucleotide sequences (transcripts). I found that easy-cluster was the easiest to start with as it can take the fa…
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I've got a file with about 200,000 sequences. When running mmseqs2 `easy-cluster` like this:
```
mmseqs easy-cluster test.fasta out.db tmp --min-seq-id 1.00 -c 0.90 -s 8 --max-seqs 1000 --cluster-mo…