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Hello,
I am preparing the short read data with these two scripts, and I wonder if you have some guidelines to help the choice.
I am assembling a 5 Gb genome, I have about 30x cov of 1x260 bp reads…
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Hi there
We are having trouble using the newer versions of Kallisto, mainly all versions >=0.50.0 with the new index. Here is what I'm doing:
```bash
$ ./kallisto_0.50.1.sif kallisto index -i t…
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This seems related to #55 and #104 but those are both closed as completed and this issue is still present on v1.0.1.
## Example
```shell
flynt -tj -s "'\u2122'.join(('a', 'b'))"
```
Results in:…
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I have a naive question about your MSA methodology. Why would the aligner choose to align short segments (1000bp) before aligning again? Perhaps I am misunderstanding the parameters to abPOA.
E…
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Occasionally, diamond returns a hit longer than the sequences against which it was mapped.
I.E. it extends beyond the reference region. Per my understanding this should be impossible.
Top 3 …
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chromosomes 1-3 have a difefrent block structure I think and thus break the code:
```
File "/mnt/c/development/varvis-download/development/bamnostic/extract_bam_subset.py", line 111, in
e…
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Hi, I use flanking sequence of D6S477 as 5' and 3' anchors to call this locus, and the sample is 9948 (a standard sample in forensic). To approve the tolerance of sequecing error or SNP variants in t…
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Hello,
I'm new to whole genome assembly using ONT reads. I have two questions.
Suppose the consensus sequences identified during the inference are not adapters but are important to the project …
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### Affected rules
- `A2-5-2`
### Description
The checker for "Rule A2-5-2 (required, implementation, automated) Digraphs shall not be used." was not implemented. Presumably, the expectation …
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Often when processing the generation request, a message like this is printed out, "_The following part of your input was truncated because CLIP can only handle sequences up to 77 tokens: [_" and then …