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yangao07
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abPOA
abPOA: an SIMD-based C library for fast partial order alignment using adaptive band
MIT License
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abPOA prune graph
#71
cgroza
opened
1 week ago
5
MSA anchoring
#70
rmhubley
opened
1 month ago
4
Missing -a option in current release files
#69
rmhubley
opened
1 month ago
0
optimum parameters for ONT reads
#68
asylvz
opened
2 months ago
6
Remove low coverage bases from consensus sequence?
#67
jiaan-yu
opened
2 months ago
7
abPOA crashes with seeding enabled
#66
glennhickey
closed
2 months ago
11
support mino acid sequences?
#65
CTForGitHub
closed
3 months ago
2
Finish-off pushing wheels from CI
#64
cjw85
opened
4 months ago
0
install make error
#63
JXAUDZF
opened
4 months ago
2
Stub out github action for python wheels
#62
cjw85
closed
5 months ago
2
Regression in v1.5.0
#61
glennhickey
closed
5 months ago
3
Sequence-dependent, reproducible crash in pyabpoa when repeatedly instantiating `pyabpoa.msa_aligner`
#60
shenker
closed
5 months ago
9
Add some auto-arch detection in Makefile, clean it up a bit
#59
cjw85
closed
6 months ago
0
Clean up setup.py and make it work for mac
#58
cjw85
closed
6 months ago
1
abPOA fails to capture difference in prefix
#57
TanyaDvorkina
closed
5 months ago
1
cython is required at build time but not install time
#56
tillea
closed
6 months ago
2
Pre-built binary programme not compatiable between difference versions of CPUs?
#55
jiaan-yu
closed
2 months ago
5
Feature request: allow passing phred scores in python interface
#54
shenker
opened
8 months ago
0
Is FASTQ output format supported?
#53
jiaan-yu
closed
8 months ago
2
Segmentation fault error
#52
Goatofmountain
closed
10 months ago
2
Fix linking abPQA library
#51
imciner2
closed
11 months ago
0
Unstable behavior in local alignment mode on x64 linux, possibly due to uninitialized values
#50
ctsa
closed
11 months ago
3
Expected behavior of the extension alignment mode.
#49
ctsa
closed
11 months ago
5
Homopolymer indels not consistently aligned
#48
rlorigro
opened
1 year ago
6
-S option for pyabpoa
#47
christopher-vollmers
opened
1 year ago
2
Does not accept other characters aside from A, C, T, and G (DNA Sequence)
#46
kcjavier21
opened
1 year ago
2
Cython is already installed but I keep getting error
#45
kcjavier21
closed
1 year ago
17
Does not install on Mac M1
#44
iskandr
closed
6 months ago
8
ERROR: Could not install packages due to an OSError: [Errno 2] No such file or directory: 'output.json'
#43
kcjavier21
closed
1 year ago
4
`abPOA ` conda installer broken?
#42
Koen-vdl
opened
1 year ago
7
PyPI package does not install
#41
cjw85
opened
1 year ago
14
fix typos caught by lintian
#40
emollier
closed
1 year ago
1
make vs cmake
#39
ldenti
closed
2 years ago
2
Change in abpoa_msa function signature
#38
adcosta17
closed
2 years ago
3
abPOA user specifiable seeds
#37
benedictpaten
opened
2 years ago
6
abPOA puts big gap in middle of sequence
#36
glennhickey
opened
2 years ago
2
progressive mode does not work with seeding
#35
glennhickey
closed
2 years ago
12
Simde
#34
yangao07
closed
2 years ago
0
make install using prefix does not set rpath
#33
EricDeveaud
closed
2 years ago
1
header installation :: bad location
#32
EricDeveaud
closed
2 years ago
1
Use avx2 interface when compiling on ARM
#31
glennhickey
closed
2 years ago
0
Align expanded sequences, trim them and then compute the consensus sequence
#30
AndreaGuarracino
opened
2 years ago
6
Consensus coverage in diploid mode
#29
ldenti
opened
2 years ago
8
abPOA as a library -- adding nodes to the graph
#28
HopedWall
closed
1 year ago
8
link to manuscript is broken
#27
zztin
closed
2 years ago
1
abpoa segfaults when building with sse4.1 but not avx2
#26
glennhickey
closed
1 year ago
8
Merge upstream
#25
glennhickey
closed
3 years ago
0
potential issue when aligning more than 1024 sequences (v1.2.4)
#24
ekg
closed
2 years ago
5
Can't install versions later than 1.0.2 using pip on Ubuntu 20.04 LTS in Docker
#23
hcstubbe
closed
3 years ago
4
abPOA seems unstable with HOX scoring matrix
#22
glennhickey
closed
3 years ago
8
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