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Dear Gaunliang,
Currently, I am trying to assemble the mitochondrial genomes of two fishes species using pair-end NGS data and some analysis is working seamlessly without any error but some have when…
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I used funannotate software to predict the genes in the assembled metagenomic sequences and obtained the corresponding result files. I want to run steps 4 to 16 in SqueezeMeta, using these result file…
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Evaluate:
- [x] how different are the mitochondrial tRNA sequences from the cytoplasmic tRNA sequences in yeast, human cells (in sequence, length, etc.)
- [x] to what extent do they have unique mo…
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Hi,
I have a set of stk files downloaded from a paper, and recompiled into cm files using cmbuild and cmcalibrate. However, when using these files to annotate tRNA using tRNAscan-SE , all the predi…
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Although both sequences are of same length, it shows,
Error. The size of two sequences in 'D0001' is not equal.
While it is working in example file. So did i make something wrong at generating…
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PANTHER:PTN002141638
Family ESSENTIAL MCU REGULATOR, MITOCHONDRIAL (PTHR33904)
Subfamily ESSENTIAL MCU REGULATOR, MITOCHONDRIAL (PTHR33904:SF1)
* **Sequences with problematic annotation **…
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Hi @fpusan @jtamames @ggnatalia
I am using squeezemeta to analyse my samples individually using the sequential mode. Thing is I am using a cluster that uses PBS job sceduler. I request a lot of nodes…
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### Description of the bug
Whenever I try running the pipeline, it gives an "unknown option" error. The "--help" option works OK though.
### Command used and terminal output
```console
Command:
…
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the run is showing this error
"wc: /media/ham/HAM_lab/Ayush/data/for_squeezemeta/darjeeling/analysis/DS_Squeezmeta_Results/intermediate/binners/concoct/: Is a directory
wc: /media/ham/HAM_lab/Ayush/…
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Hello.
I tried to reproduce the [MAESTER publication](https://github.com/petervangalen/MAESTER-2021) but I hit some issues on having too many open file limit on [a scRNA-seq dataset](https://trac…