UCSC-LoweLab tRNAscan-SE issues

UCSC-LoweLab / tRNAscan-SE

A program for detection of tRNA genes

GNU General Public License v3.0

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issues

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Conda seemingly installs version 1.4

#41 mstagliamonte closed 2 months ago
2
acquire all reference tRNA sequences of Homo sapiens

#40 SHIPTOWN closed 2 months ago
1
Inquiry on the undetermined (NNN) tRNA

#39 songmj86 opened 3 months ago
1
Negative tRNA coordinate values

#38 ohickl opened 5 months ago
3
Custom anticodon models?

#37 austinv11 opened 6 months ago
1
support for piping from stdin and/or for gzip-compressed input files

#36 jvollme opened 6 months ago
1
Sup isotype

#35 jucosie closed 6 months ago
2
mature tRNA & precursor tRNAs

#34 cement-head closed 7 months ago
1
Undet and NNN Anticodon in alternative models

#33 ishengtsai closed 8 months ago
2
Bug? In gff, start > end in exon

#32 Hocnonsense opened 9 months ago
1
it takes forever to process

#31 kayanac opened 12 months ago
6
clarification on introns/format

#30 nextgenusfs closed 12 months ago
1
Using config file with tRNAscan-SE from conda

#29 julie-tooi closed 1 year ago
2
Missing TPCsignal

#28 mesti90 closed 1 year ago
1
Parallel compile error

#27 sjaenick opened 1 year ago
0
[Feature Request] tRNA model for giant viruses

#26 jolespin opened 1 year ago
0
Error: CM file not found, but the file exists in the path

#25 yyy-nkl closed 1 year ago
1
[Feature request] tRNA model for microeukaryotic/protist mitochondria

#24 jolespin opened 1 year ago
3
Incompatibility with infernal although infernal 1.1.4 installed

#23 johnne closed 1 year ago
6
Latest version in Bioconda

#22 llk578496 closed 1 year ago
2
Was the organelle model made based only on plastid tRNAs?

#21 shelkmike closed 1 year ago
1
Error: substr outside of string tRNAscan-SE/tRNAscanSE/Utils.pm line 117, <__ANONIO__> line 58276.

#20 rhysnewell closed 1 year ago
1
output file format: minus strand entries, extra spaces, header

#19 darked89 opened 1 year ago
1
set "tRNAscan-SE.conf" to standard unix directory /etc

#18 kbipinkumar opened 1 year ago
3
plant mitochondria model

#17 zmz1988 closed 1 year ago
2
error：substr outside of string at tRNAscan-SE/tRNAscanSE/Utils.pm line 117, <__ANONIO__> line 16009.

#16 yweii closed 1 year ago
1
No clear tutorial for the installation and using command line

#15 B-1991-ing closed 1 year ago
14
sprinzl position alignment files missing

#14 lpryszcz closed 1 year ago
1
Writing error of IUPAC characters

#13 EdderDaniel closed 2 years ago
3
[Need Help] FATAL: Unable to open output file

#12 hjgwak closed 2 years ago
2
need help: Unable to open /home/cz/fasta/h.faa for reading. Aborting program.

#11 yuanzou865 closed 2 years ago
1
Unable to open path/to/inputfile for reading.

#10 Pablolo99 closed 3 years ago
2
buffer overflow detected ***: trnascan-1.4 terminated

#9 rachidelfermi closed 2 years ago
1
EukHighConfidenceFilter fails to write output file

#8 sanaek closed 3 years ago
6
Unmasked or masked genome

#7 StevenBai97 closed 3 years ago
2
error: implicit declaration of function 'XXX' is invalid in C99

#6 dlavrov closed 3 years ago
2
trnascan-1.4 error

#5 minjinhan closed 3 years ago
1
Unable to open /tmp/tscan16133_cm_SeC.out for reading. Aborting program.

#4 yqchen17 closed 3 years ago
1
make: unrecognized option '--prefix='

#3 Tdanis closed 4 years ago
7
Unable to open /tmp/tscan20152_iso_cm.tab for reading. Aborting program.

#2 asttra closed 3 years ago
5
tRNAscan error##permission denied

#1 ashaneev closed 4 years ago
1