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jtamames
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SqueezeMeta
A complete pipeline for metagenomic analysis
GNU General Public License v3.0
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SqueezeMeta_conf.pl
#857
AntonioPuriel
opened
2 days ago
1
test_install.pl: Error with minimap2 and kmer-db
#856
Selucote82
opened
5 days ago
6
metaFlye
#855
athavars
closed
1 week ago
6
Taxonomy abundance from SQM object
#854
Vincev454
opened
1 week ago
1
RESTART SEQUENTIAL MODE
#853
EorgeKit
opened
2 weeks ago
8
How to combine the results analized by 'sequential mode'
#852
mingxues2024
opened
2 weeks ago
2
antimicrobial function SQMlite
#851
inej90
opened
2 weeks ago
1
Ways to speed up runtime
#850
Vincev454
opened
2 weeks ago
8
Metadata connections SQMtools
#849
inej90
opened
3 weeks ago
1
Problem to load SQM project
#848
inej90
closed
3 weeks ago
3
Stopping in STEP5
#847
guianrey
opened
3 weeks ago
4
Stopping in STEP1 -> 01.run_all_assemblies.pl. Program finished abnormally
#846
Shivabrahmam
closed
1 month ago
11
Stopping in STEP4 -> 04.rundiamond.pl
#845
Biotrinf
closed
3 weeks ago
3
Stopping in STEP1 -> 01.run_all_assemblies.pl. Program finished abnormally
#844
AntonioPuriel
opened
1 month ago
4
Understanding KEGG pathways output
#843
da-shanmugapriya
opened
1 month ago
3
Stopping in STEP10 -> 10.mapsamples.pl. Program finished abnormally Line no 18
#842
vmevada102
opened
1 month ago
4
nrdmnd database issue
#841
abhirajnair2002
closed
1 month ago
1
Issue with SQMtools
#840
mradz19
opened
1 month ago
9
SQMtools run in R
#839
AntonioPuriel
opened
1 month ago
3
Is low taxonomic resolution to be expected?
#838
chrismitbiz
closed
1 month ago
3
loadSQM does not let me load the project
#837
inej90
opened
1 month ago
1
Illegal division by zero in step 18.getbins.pl
#836
mradz19
closed
1 month ago
15
server not reachable
#835
abhirajnair2002
closed
2 months ago
3
Program ending abruptly
#834
abhirajnair2002
closed
2 months ago
1
restarting from step 10
#833
timyerg
closed
1 month ago
4
Issue with download of database
#832
abhirajnair2002
closed
2 months ago
1
Assembly error
#831
abhirajnair2002
opened
2 months ago
11
unable to down load databases
#830
zuriashm
opened
2 months ago
2
Binning Issues - Failure to generate outputs in intermediate/binners folder.
#829
MicroSeq
closed
2 months ago
8
SQM_LONGREADS.PL died at line 933
#828
inej90
opened
2 months ago
1
Died at /root/micromamba/envs/SqueezeMeta/bin/SqueezeMeta.pl line 239
#827
Cathernis
closed
1 month ago
7
Step 14 Not Progressing
#826
giovrosin
closed
1 month ago
9
Workflow, tool version outline
#825
s-junguy
opened
2 months ago
7
link to kegg database
#824
bresyd
closed
2 months ago
3
Abundant phylum not being classified
#823
Manso002
closed
1 month ago
28
Error in installation
#822
jmpe77
closed
2 months ago
8
How to use data obtained from other software to start from the middle of the steps of SqueezeMeta and run the subsequent steps?
#821
mojiefei
opened
3 months ago
4
the sample file!
#820
Khattab2022
closed
3 months ago
0
External database - CAZy Annotations missing.
#819
da-shanmugapriya
opened
3 months ago
7
Error when in step 1 Assembly with megahit
#818
gallegobq
closed
2 months ago
3
SQM for genomics
#817
inej90
closed
1 month ago
4
How to set the output path of the Sequential mode?
#816
Bellallalli
closed
2 months ago
4
Illegal division by zero in step 18.getbins.pl - at calculating coverage
#815
SamBrutySci
closed
3 months ago
3
Question on diamond, block and ram usage
#814
eperezv
closed
2 months ago
5
sqm2zip has stopped working?
#813
dutchscientist
closed
3 months ago
6
Error in step 10
#812
cmaltec
closed
2 months ago
21
Can not open k141.final.contigs.fa. Now exit to system...'
#811
mingxues2024
closed
2 months ago
11
10.mapsamples.pl. Program finished abnormally
#810
AntonioPuriel
closed
2 months ago
2
-binners, just do maxbin
#809
laibinhuang
closed
2 months ago
12
Missing file at step 10
#808
mradz19
closed
2 months ago
2
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