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Hi,
How may I fix this run error for executing the _S. cerevisiae_ test case, using your `LTRpred`?
BTW, the 1st test with Hsapiens_ChrY_ltrpred input completed without any error or warning me…
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Hi,
Thank you for developing the excellent `straglr` tool. I've read your paper "Straglr: discovering and genotyping tandem repeat expansions using whole genome long-read sequences". I'm still confus…
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Hello,
I would like to create a new `ChromatinAssay` with a `MotifObject` but am running into an error.
I first created a `MotifObject` using `motifObj = CreateMotifObject(data = motifMatchesMa…
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Hi,
I have a single cell multiomics (RNA + ATAC seq) dataset, and have used another programme (ArchR) to generate pseudotime trajectories. I have 2 trajectories of interest - for each I have a matr…
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See https://numpy.org/neps/nep-0051-scalar-representation.html - for example this:
```pycon
>>> np.float32(3.0)
3.0
```
becomes:
```pycon
>>> np.float32(3.0)
np.float32(3.0)
```
As p…
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Hello,
I would like to go through the tutorial, but the link (www.readthedocs.io/mubind) for single-cell genomics data in the data availability section of the paper does not seem to work.
Could…
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Hello! I thank you for the great tool that you've created. It's been really helpful. However, I have questions regarding multiallelic short tandem repeats on ExpansionHunter. I found that EH doesn't s…
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Hello, I'm a student currently working on my master's project. Given that our lab is taking its first steps into nanopore sequencing, we're navigating somewhat blindly and lack sufficient resources fo…
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Hello,
I am working with multiome data (RNA+ATAC). I am working with 5 samples, and I have first integrated the RNA assay with rpca, the ATAC assay with rlsi, then combined both using wnn approach.
…
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A collaborator for the [CMG_Muntoni_External_Genome](https://seqr.broadinstitute.org/project/R0536_cmg_muntoni_external_gen/project_page) project discovered that no variants are returned when `TF bind…